IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 0..2560265
2297 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 56.95      245..1747     	 +	500	50841497	-	PPA0001	-	chromosomal replication initiator protein DnaA	
2	 57.47        1868..3379     	 +	503	50841498	-	PPA0002	-	DNA polymerase III, beta chain	
3	 60.91        3666..4169     	 +	167	50841499	-	PPA0003	-	hypothetical protein	
4	 59.58        4227..5411     	 +	394	50841500	-	PPA0004	-	DNA replication and repair protein RecF	
5	 61.08        5389..5997     	 +	202	50841501	-	PPA0005	-	hypothetical conserved protein	
6	 58.59        8304..9491     	 +	395	50841502	-	PPA0008	-	mannose-6-phosphate isomerase	
7	 59.86        9733..11805    	 +	690	50841503	-	PPA0009	-	DNA gyrase subunit B	
8	 61.02       11847..14522    	 +	891	50841504	-	PPA0010	-	DNA gyrase subunit A	
9	 58.61       14515..15147    	 +	210	50841505	-	PPA0011	-	hypothetical conserved protein	
10	 61.82       15246..16214    	 -	322	50841506	-	PPA0012	-	L-lactate dehydrogenase	
11	 57.44       16412..16606    	 +	64	50841507	-	PPA0013	-	hypothetical protein	
12	 59.23       16732..17739    	 +	335	50841508	-	PPA0014	-	putative transcriptional regulator	
13	 58.96       17736..19241    	 +	501	50841509	-	PPA0015	-	ABC transporter protein	
14	 54.19 -1    19324..20301    	 +	325	50841510	-	PPA0016	-	ribose ABC transporter	
15	 55.94 -1    20350..21291    	 +	313	50841511	-	PPA0017	-	periplasmic sugar-binding protein	
16	 61.94       21288..22217    	 +	309	50841512	-	PPA0018	-	sugar kinase	
17	 57.81       22214..22597    	 +	127	50841513	-	PPA0019	-	high affinity ribose transport protein RbsD	
18	 54.81 -1    22780..23049    	 +	89	50841514	-	PPA0020	-	hypothetical protein	
19	 51.15 -2    23201..23677    	 -	158	50841515	-	PPA0021	-	PTS system, galactitol-specific IIA component	
20	 54.18 -1    23734..24990    	 -	418	50841516	-	PPA0022	-	PTS system, galactitol-specific IIC component	
21	 53.47 -2    25011..25313    	 -	100	50841517	-	PPA0023	-	PTS system, galactitol-specific IIB component	
22	 55.99 -1    25303..25686    	 -	127	50841518	-	PPA0025	-	alcohol dehydrogenase	
23	 47.72 -2    28427..28711    	 -	94	50841519	-	PPA2391	-	hypothetical protein	
24	 59.84       28718..29083    	 -	121	50841520	-	PPA2390	-	hypothetical protein	
25	 63.24       29313..29984    	 -	223	50841521	-	PPA0029	-	hypothetical protein	
26	 66.84 +2    30008..30586    	 -	192	50841522	-	PPA0030	-	putative phosphatase	
27	 62.19       30784..31542    	 +	252	50841523	-	PPA0031	-	transcriptional regulator	
28	 53.66 -1    31730..32152    	 +	140	50841524	-	PPA2392	-	hypothetical protein	
29	 57.18       32158..32895    	 -	245	50841525	-	PPA0032	-	hypothetical protein	
30	 52.22 -2    32889..33428    	 -	179	50841526	-	PPA0033	-	hypothetical protein	
31	 62.42       33561..34619    	 +	352	50841527	-	PPA0034	-	histidinol-phosphate aminotransferase	
32	 61.55       35552..36118    	 +	188	50841528	-	PPA0037	-	acetyltransferase	
33	 61.21       36132..36791    	 +	219	50841529	-	PPA0038	-	hypothetical protein	
34	 61.50       37044..37682    	 +	212	50841530	-	PPA0039	-	putative membrane protein	
35	 61.66       37682..38500    	 +	272	50841531	-	PPA0040	-	hypothetical protein	
36	 61.19       38497..39975    	 +	492	50841532	-	PPA0041	-	secretion system protein	
37	 61.79       39966..40847    	 +	293	50841533	-	PPA0042	-	membrane spanning protein	
38	 61.35       40840..41742    	 +	300	50841534	-	PPA0043	-	membrane associated protein	
39	 60.18       41739..42401    	 +	220	50841535	-	PPA0044	-	putative membrane protein	
40	 61.37       42398..42907    	 +	169	50841536	-	PPA0046	-	putative membrane protein	
41	 62.76       42904..45666    	 +	920	50841537	-	PPA0047	-	hypothetical membrane-spanning protein	
42	 60.86       45713..47125    	 -	470	50841538	-	PPA0048	-	conserved membrane protein	
43	 60.82       47426..49135    	 +	569	50841539	-	PPA0049	-	formate--tetrahydrofolate ligase	
44	 60.63       49241..49654    	 +	137	50841540	-	PPA0050	-	hypothetical protein	
45	 58.19       49651..50181    	 -	176	50841541	-	PPA0051	-	hypothetical protein	
46	 61.19       50197..50871    	 -	224	50841542	-	PPA0052	-	hypothetical protein	
47	 59.95       51068..53539    	 -	823	50841543	-	PPA0053	-	ABC transporter associated permease	
48	 60.97       53539..54573    	 -	344	50841544	-	PPA0054	-	ABC transporter ATP-binding protein	
49	 60.43       54681..55337    	 -	218	50841545	-	PPA0055	-	two-component response regulator	
50	 55.23 -1    55356..55967    	 -	203	50841546	-	PPA0056	-	hypothetical membrane spanning protein	
51	 57.64       56040..56870    	 -	276	50841547	-	PPA0057	-	sugar transport permease BglB	
52	 54.96 -1    56867..57763    	 -	298	50841548	-	PPA0058	-	transport permease	
53	 61.38       57848..59152    	 -	434	50841549	-	PPA0059	-	sugar-binding protein	
54	 55.21 -1    59132..59323    	 +	63	50841550	-	PPA2395	-	hypothetical protein	
55	 61.14       59565..60251    	 +	228	50841551	-	PPA0060	-	operon regulator, DeoR family	
56	 63.64 +1    60248..61636    	 +	462	50841552	-	PPA0061	-	putative glucosidase	
57	 63.69 +1    61629..64757    	 +	1042	50841553	-	PPA0062	-	glycosyl hydrolase	
58	 66.67 +2    64754..65809    	 +	351	50841554	-	PPA0063	-	hypothetical membrane-associated protein	
59	 63.88 +1    65803..66447    	 +	214	50841555	-	PPA0064	-	putative hydrolase	
60	 63.50 +1    66444..67739    	 +	431	50841556	-	PPA0065	-	conserved hypothetical protein	
61	 64.39 +1    67723..69261    	 -	512	50841557	-	PPA0066	-	glycosyl hydrolase	
62	 64.21 +1    69367..70302    	 +	311	50841558	-	PPA0067	-	putative carbohydrate kinase	
63	 63.97 +1    70321..71691    	 -	456	50841559	-	PPA0068	-	putative two component sensor kinase	
64	 59.09       71871..72860    	 +	329	50841560	-	PPA0069	-	UDP-glucose 4-epimerase	
65	 61.52       72933..73748    	 -	271	50841561	-	PPA0070	-	regulator putative TetR-family	
66	 62.82       73685..76414    	 +	909	50841562	-	PPA0071	-	putative membrane transport protein	
67	 64.77 +1    76411..78780    	 +	789	50841563	-	PPA0072	-	membrane associated protein	
68	 61.76       78966..80411    	 -	481	50841564	-	PPA0073	-	hypothetical protein	
69	 61.81       80414..81175    	 -	253	50841565	-	PPA0074	-	ABC transporter, ATP-binding protein	
70	 58.06       81438..82250    	 +	270	50841566	-	PPA0075	-	hypothetical protein	
71	 49.36 -2    82471..83481    	 +	336	50841567	-	PPA0076	-	periplasmic binding protein	
72	 54.94 -1    83628..84650    	 +	340	50841568	-	PPA0077	-	ABC transporter	
73	 53.65 -2    84643..85410    	 +	255	50841569	-	PPA0078	-	permease	
74	 61.52       85493..86950    	 +	485	50841570	-	PPA0079	-	aldehyde dehydrogenase	
75	 63.95 +1    86995..88281    	 +	428	50841571	-	PPA0080	-	chloride channel protein	
76	 58.39       88336..90702    	 +	788	50841572	-	PPA0081	-	carbohydrate phosphorylase	
77	 65.25 +1    91144..91779    	 -	211	50841573	-	PPA0082	-	hypothetical membrane associated protein	
78	 63.28 +1    91967..94183    	 -	738	50841574	-	PPA0083	-	hypothetical protein	
79	 63.45 +1    94313..95524    	 -	403	50841575	-	PPA0084	-	transcriptional regulator, Rok family	
80	 58.71       95889..97232    	 +	447	50841576	-	PPA0085	-	periplasmic protein	
81	 56.52 -1    97276..98211    	 +	311	50841577	-	PPA0086	-	putative permease protein	
82	 59.86       98211..99092    	 +	293	50841578	-	PPA0087	-	permease protein	
83	 65.95 +1    99230..100351   	 +	373	50841579	-	PPA0088	-	putative transcriptional regulator	
84	 64.70 +1   100341..102530   	 +	729	50841580	-	PPA0089	-	conserved protein, glycosyl hydrolase family	
85	 61.21      102809..104017   	 +	402	50841581	-	PPA0090	-	6-phosphofructokinase 2	
86	 65.12 +1   104055..104636   	 -	193	50841582	-	PPA0091	-	putative regulatory protein	
87	 62.62      104633..107374   	 -	913	50841583	-	PPA0092	-	conserved membrane protein	
88	 64.81 +1   107367..108500   	 -	377	50841584	-	PPA0093	-	hypothetical membrane protein	
89	 53.84 -1   108930..110402   	 +	490	50841585	-	PPA0094	-	aspartate ammonia-lyase	
90	 58.12      110409..111707   	 +	432	50841586	-	PPA0095	-	C4-dicarboxylate transporter	
91	 57.73      111808..112098   	 -	96	50841587	-	PPA0096	-	conserved protein	
92	 59.37      112227..113678   	 +	483	50841588	-	PPA0097	-	catalase	
93	 66.67 +2   113716..115461   	 -	581	50841589	-	PPA0098	-	ABC transporter	
94	 67.12 +2   115458..117224   	 -	588	50841590	-	PPA0099	-	ABC transporter	
95	 65.15 +1   117221..118207   	 -	328	50841591	-	PPA0100	-	magnesium-chelatase subunit ChlI	
96	 66.82 +2   118209..120173   	 -	654	50841592	-	PPA0101	-	magnesium-chelatase 67 kDa subunit	
97	 65.52 +1   120173..124195   	 -	1340	50841593	-	PPA0102	-	cobalamin biosynthesis protein CobN	
98	 66.85 +2   124075..125169   	 -	364	50841594	-	PPA0103	-	conserved radical SAM superfamily protein	
99	 67.47 +2   125166..126167   	 -	333	50841595	-	PPA0104	-	ABC transporter	
100	 65.18 +1   126164..127303   	 -	379	50841596	-	PPA0105	-	transporter (putative iron (III) permease)	

 
 60.05 MEAN 
 
 3.20  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.