IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.73   STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 0..2343476
1909 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 50.84        1..1422     	 +	473	34539881	dnaA	PG0001	-	chromosomal replication initiator protein DnaA	
2	 52.36        1435..2007     	 +	190	34539882	-	PG0002	-	hexapeptide transferase family protein	
3	 49.90        2009..3028     	 -	339	34539883	-	PG0003	-	membrane protein, putative	
4	 52.34        3108..3812     	 +	234	34539884	-	PG0004	-	transcriptional regulator, Sir2 family	
5	 51.69        3887..5041     	 -	384	34539885	-	PG0005	-	conserved hypothetical protein	
6	 51.84        5094..6422     	 -	442	34539886	-	PG0006	-	MATE efflux family protein	
7	 48.43        6845..7003     	 -	52	34539887	-	PG0007	-	hypothetical protein	
8	 49.73        7175..8113     	 -	312	34539888	-	PG0008	-	ISPg5 transposase Orf2	
9	 45.38        8167..8556     	 -	129	34539889	-	PG0009	-	ISPg5 transposase Orf1	
10	 55.08 +1     8915..11494    	 +	859	34539890	clpC	PG0010	-	ATP-dependent Clp protease, ATP-binding subunit ClpC	
11	 53.22       11634..14645    	 +	1003	34539891	-	PG0011	-	glycosyl hydrolase, family 3	
12	 49.27       14693..15721    	 +	342	34539892	-	PG0012	-	L-threonine-O-3-phosphate decarboxylase, putative	
13	 52.53       15731..16501    	 +	256	34539893	-	PG0013	-	conserved hypothetical protein	
14	 53.04       17087..18436    	 +	449	34539894	-	PG0016	-	sigma-54 dependent DNA-binding response regulator	
15	 50.45       18447..19784    	 +	445	34539895	-	PG0017	-	sensor histidine kinase	
16	 49.35       19788..22034    	 +	748	34539896	-	PG0018	-	hypothetical protein	
17	 45.51       22180..23337    	 +	385	34539897	-	PG0019	-	ISPg4 transposase	
18	 50.35       23522..24226    	 +	234	34539898	-	PG0020	-	transcriptional regulator, MarR family	
19	 52.99       24212..25213    	 -	333	34539899	-	PG0021	-	TIM-barrel protein, putative, NifR3 family	
20	 52.24       25210..26886    	 -	558	34539900	-	PG0022	-	sulfate permease family protein	
21	 53.88 +1    27872..28528    	 +	218	34539901	-	PG0024	-	DNA-binding protein, putative	
22	 53.64 +1    28597..29256    	 +	219	34539902	-	PG0025	-	fumarylacetoacetate hydrolase family protein	
23	 51.13       29374..32745    	 +	1123	34539903	-	PG0026	-	hypothetical protein	
24	 47.45       32821..33996    	 +	391	34539904	-	PG0027	-	hypothetical protein	
25	 50.31       34003..34491    	 +	162	34539905	ispF	PG0028	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	
26	 56.18 +1    35986..36462    	 +	158	34539906	-	PG0030	-	cytidine deaminase	
27	 49.78       36995..37669    	 -	224	34539907	-	PG0031	-	hypothetical protein	
28	 54.02 +1    37717..40302    	 -	861	34539908	-	PG0032	-	beta-mannosidase, putative	
29	 53.43       40332..41630    	 -	432	34539909	-	PG0033	-	RmuC domain protein	
30	 48.25       42325..42639    	 -	104	34539910	trx	PG0034	-	thioredoxin	
31	 49.28       42688..46374    	 -	1228	34539911	dnaE	PG0035	-	DNA polymerase III, alpha subunit	
32	 44.81       46659..47024    	 +	121	34539912	rplS	PG0037	-	ribosomal protein L19	
33	 42.50 -1    47777..47896    	 +	39	34539913	-	PG0039	-	hypothetical protein	
34	 45.13       48074..48463    	 +	129	34539914	-	PG0040	-	ISPg5 transposase Orf1	
35	 50.27       48517..49455    	 +	312	34539915	-	PG0041	-	ISPg5 transposase Orf2	
36	 52.54       49769..51049    	 +	426	34539916	glyA	PG0042	-	serine hydroxymethyltransferase	
37	 50.81       51206..53539    	 +	777	34539917	nahA	PG0043	-	beta-hexosaminidase	
38	 51.82       54199..56253    	 +	684	34539918	htpG	PG0045	-	heat shock protein HtpG	
39	 51.11       56436..57290    	 -	284	34539919	cdsA	PG0046	-	phosphatidate cytidylyltransferase	
40	 51.83       57319..59340    	 -	673	34539920	-	PG0047	-	cell division protein FtsH, putative	
41	 49.73       59544..60647    	 -	367	34539921	-	PG0048	-	conserved hypothetical protein TIGR00092	
42	 42.42 -1    60666..60830    	 -	54	34539922	-	PG0049	-	hypothetical protein	
43	 45.34       61056..62213    	 +	385	34539923	-	PG0050	-	ISPg4, transposase	
44	 49.83       63559..64746    	 +	395	34539924	-	PG0052	-	sensor histidine kinase	
45	 46.67       65057..65176    	 -	39	34539925	-	PG0053	-	hypothetical protein	
46	 49.74       65205..66959    	 +	584	34539926	recJ	PG0054	-	single-stranded-DNA-specific exonuclease RecJ	
47	 48.20       66956..68011    	 +	351	34539927	-	PG0055	-	conserved domain protein	
48	 42.15 -1    68142..69842    	 +	566	34539928	-	PG0056	-	hypothetical protein	
49	 48.27       69875..71059    	 +	394	34539929	pncB	PG0057	-	nicotinate phosphoribosyltransferase	
50	 50.00       71059..71652    	 +	197	34539930	nadD	PG0058	-	nicotinate (nicotinamide) nucleotide adenylyltransferase	
51	 51.56       71666..72049    	 +	127	34539931	-	PG0059	-	hypothetical protein	
52	 45.36       72056..72238    	 +	60	34539932	-	PG0060	-	hypothetical protein	
53	 51.85       72285..73823    	 +	512	34539933	yngK-1	PG0061	-	yngK protein	
54	 53.01       73828..75870    	 +	680	34539934	-	PG0062	-	TPR domain protein	
55	 52.33       75968..77146    	 -	392	34539935	-	PG0063	-	outer membrane efflux protein	
56	 52.98       77164..80283    	 -	1039	34539936	-	PG0064	-	heavy metal efflux pump, CzcA family	
57	 53.23       80303..81277    	 -	324	34539937	-	PG0065	-	efflux transporter, RND family, MFP subunit	
58	 45.14       81354..81641    	 -	95	34539938	-	PG0066	-	hypothetical protein	
59	 51.59       81888..82139    	 +	83	34539939	-	PG0068	-	hypothetical protein	
60	 53.86 +1    82511..84025    	 -	504	34539940	-	PG0069	-	conserved hypothetical protein	
61	 49.69       84030..84824    	 -	264	34539941	lpxA	PG0070	-	acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine acyltransferase	
62	 49.60       84821..86209    	 -	462	34539942	-	PG0071	-	UDP-3-O-acyl-GlcNAc deacetylase/beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ	
63	 51.33       86188..87237    	 -	349	34539943	lpxD	PG0072	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	
64	 50.30       87330..88160    	 -	276	34539944	-	PG0073	-	orotidine 5'-monophosphate decarboxylase	
65	 54.70 +1    88177..89262    	 -	361	34539945	prfA	PG0074	-	peptide chain release factor 1	
66	 54.19 +1    89287..90528    	 -	413	34539946	-	PG0075	-	phosphoribosylformylglycinamidine cyclo-ligase, putative	
67	 52.02       90482..91423    	 -	313	34539947	-	PG0076	-	N-acetylmuramoyl-L-alanine amidase, family 4	
68	 39.77 -1    91656..92354    	 -	232	34539948	-	PG0078	-	conserved hypothetical protein	
69	 40.78 -1    92327..93628    	 -	433	34539949	-	PG0079	-	abortive infection protein, putative	
70	 42.42 -1    93659..93922    	 -	87	34539950	-	PG0080	-	hypothetical protein	
71	 53.95 +1    93945..96122    	 +	725	34539951	-	PG0081	-	hypothetical protein	
72	 51.50       96184..97086    	 +	300	34539952	-	PG0082	-	hypothetical protein	
73	 52.80       97092..97877    	 +	261	34539953	-	PG0083	-	hypothetical protein	
74	 55.67 +1    97972..99171    	 +	399	34539954	sda	PG0084	-	L-serine dehydratase, iron-sulfur-dependent, single chain form	
75	 52.49       99312..100616   	 +	434	34539955	-	PG0085	-	alpha-galactosidase	
76	 50.30      100635..102449   	 -	604	34539956	-	PG0086	-	ATP-dependent RNA helicase, DEAD/DEAH box family	
77	 54.11 +1   102595..103215   	 -	206	34539957	-	PG0087	-	SIS domain protein	
78	 50.66      103415..104632   	 +	405	34539958	-	PG0088	-	peptidase, M16 family	
79	 51.67      105664..106143   	 +	159	34539959	-	PG0090	-	Dps family protein	
80	 52.55      106273..107490   	 -	405	34539960	-	PG0091	-	transporter, putative	
81	 52.98      107549..108688   	 -	379	34539961	-	PG0092	-	transporter, putative	
82	 56.33 +1   108733..109728   	 -	331	34539962	-	PG0093	-	HlyD family secretion protein	
83	 55.11 +1   109778..111283   	 -	501	34539963	-	PG0094	-	outer membrane efflux protein, putative	
84	 53.25      112178..114853   	 -	891	34539964	mutS	PG0095	-	DNA mismatch repair protein MutS	
85	 50.79      115146..115838   	 -	230	34539965	-	PG0097	-	conserved hypothetical protein TIGR01033	
86	 38.38 -2   115835..115933   	 -	32	34539966	-	PG0098	-	hypothetical protein	
87	 52.64      115917..118376   	 -	819	34539967	pheT	PG0099	-	phenylalanyl-tRNA synthetase, beta subunit	
88	 45.24      119142..119309   	 -	55	34539968	-	PG0100	-	hypothetical protein	
89	 44.29      119338..119556   	 +	72	34539969	-	PG0101	-	hypothetical protein	
90	 44.65      121143..121301   	 +	52	34539970	-	PG0102	-	hypothetical protein	
91	 44.23      121430..121585   	 +	51	34539971	-	PG0103	-	hypothetical protein	
92	 52.51      125481..127508   	 +	675	34539972	topB-1	PG0104	-	DNA topoisomerase III	
93	 37.03 -2   128858..129994   	 +	378	34539973	-	PG0106	-	glycosyl transferase, group 4 family protein	
94	 44.17      130241..131449   	 +	402	34539974	epsD	PG0108	-	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase	
95	 38.24 -2   131471..132694   	 +	407	34539975	-	PG0109	-	hypothetical protein	
96	 39.96 -1   132731..133771   	 +	346	34539976	-	PG0110	-	glycosyl transferase, group 1 family protein	
97	 37.75 -2   133820..135088   	 +	422	34539977	-	PG0111	-	capsular polysacharride biosynthesis gene, putative	
98	 42.42 -1   136065..136922   	 +	285	34539978	-	PG0113	-	conserved domain protein	
99	 47.89      136919..138058   	 +	379	34539979	-	PG0114	-	hypothetical protein	
100	 39.04 -2   138178..138615   	 +	145	34539980	-	PG0115	-	hexapeptide transferase family protein	

 
 48.73 MEAN 
 
 4.83  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.