IslandPath Analysis: Pirellula sp.



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.91   STD DEV: 2.96
Pirellula sp. 1, complete genome - 0..7145576
7325 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 52.22        3..182      	 -	59	32470667	-	RB2	-	hypothetical protein-signal peptide and transmembrane prediction	
2	 48.65 -2       39..260      	 +	73	32470668	-	RB3	-	hypothetical protein-signal peptide and transmembrane prediction	
3	 53.41         399..1514     	 -	371	32470669	-	RB5	-	hypothetical protein-signal peptide and transmembrane prediction	
4	 55.35        1548..1706     	 +	52	32470670	-	RB7	-	hypothetical protein	
5	 57.29        1733..5263     	 -	1176	32470671	-	RB8	-	helicase	
6	 55.98        5458..5850     	 -	130	32470672	-	RB13	-	hypothetical protein	
7	 57.77        5836..7386     	 +	516	32470673	-	RB14	-	hypothetical protein	
8	 59.19 +1     7575..8069     	 -	164	32470674	-	RB16	-	hypothetical protein-putative conserved hypothetical protein	
9	 59.60 +1     7757..8251     	 -	164	32470675	-	RB17	-	hypothetical protein-putative conserved hypothetical protein	
10	 58.99 +1     7939..8433     	 -	164	32470676	-	RB18	-	hypothetical protein-putative conserved hypothetical protein	
11	 57.92 +1     8303..8542     	 -	79	32470677	-	RB19	-	hypothetical protein	
12	 54.54        8570..10894    	 -	774	32470678	-	RB20	-	similar to myosin heavy chain	
13	 57.36       11131..13935    	 +	934	32470679	-	RB24	-	similar to L-sorbosone dehydrogenase	
14	 56.15       14053..14556    	 +	167	32470680	-	RB27	-	hypothetical protein	
15	 56.84       14498..15148    	 -	216	32470681	-	RB29	-	hypothetical protein-transmembrane prediction	
16	 53.57       15460..15627    	 -	55	32470682	-	RB33	-	hypothetical protein	
17	 55.05       15692..16483    	 -	263	32470683	-	RB34	-	hypothetical protein	
18	 50.63 -1    16591..17700    	 -	369	32470684	-	RB35	-	hypothetical protein	
19	 51.70 -1    17693..17839    	 -	48	32470685	-	RB36	-	hypothetical protein	
20	 51.76 -1    17846..18328    	 -	160	32470686	-	RB37	-	hypothetical protein-signal peptide and transmembrane prediction	
21	 51.31 -1    18331..18636    	 +	101	32470687	-	RB38	-	hypothetical protein	
22	 50.80 -1    18668..19417    	 -	249	32470688	-	RB39	-	transposase	
23	 51.95       19461..19922    	 -	153	32470689	-	RB40	-	hypothetical protein	
24	 52.61       20053..20550    	 -	165	32470690	-	RB41	-	hypothetical protein-transmembrane prediction	
25	 56.97       20627..20791    	 -	54	32470691	-	RB43	-	hypothetical protein	
26	 56.44       20825..21127    	 -	100	32470692	-	RB44	-	hypothetical protein	
27	 54.21       21151..21471    	 -	106	32470693	-	RB45	-	hypothetical protein	
28	 55.31       21455..22282    	 -	275	32470694	-	RB46	-	hypothetical protein-transmembrane prediction	
29	 52.59       22495..23190    	 -	231	32470695	-	RB50	-	hypothetical protein-transmembrane prediction	
30	 55.75       23323..23670    	 -	115	32470696	-	RB52	-	hypothetical protein-transmembrane prediction	
31	 55.67       23873..24472    	 -	199	32470697	-	RB54	-	hypothetical protein-signal peptide and transmembrane prediction	
32	 50.37 -1    24564..24833    	 -	89	32470698	-	RB56	-	hypothetical protein	
33	 47.41 -2    24939..25208    	 -	89	32470699	-	RB59	-	hypothetical protein-transmembrane prediction	
34	 49.74 -1    25165..25359    	 +	64	32470700	-	RB60	-	hypothetical protein	
35	 48.59 -2    25378..25554    	 +	58	32470701	-	RB61	-	hypothetical protein	
36	 46.46 -2    25588..25983    	 +	131	32470702	-	RB62	-	hypothetical protein	
37	 52.16       26082..26336    	 +	84	32470703	-	RB66	-	hypothetical protein	
38	 53.29       26435..27682    	 +	415	32470704	-	RB68	-	hypothetical protein-signal peptide and transmembrane prediction	
39	 57.40       27689..28141    	 +	150	32470705	-	RB71	-	hypothetical protein-signal peptide and transmembrane prediction	
40	 56.61       28138..28674    	 +	178	32470706	-	RB72	-	hypothetical protein-signal peptide and transmembrane prediction	
41	 50.84 -1    28727..29023    	 +	98	32470707	-	RB73	-	hypothetical protein-transmembrane prediction	
42	 53.58       29164..29736    	 +	190	32470708	-	RB76	-	hypothetical protein-signal peptide prediction	
43	 53.52       29168..29692    	 +	174	32470709	-	RB77	-	hypothetical protein-transmembrane prediction	
44	 51.76 -1    29767..30276    	 +	169	32470710	-	RB80	-	hypothetical protein-transmembrane prediction	
45	 54.32       30279..30440    	 +	53	32470711	-	RB81	-	hypothetical protein	
46	 53.89       30494..31135    	 +	213	32470712	-	RB82	-	conserved hypothetical protein-putative cysteine protease	
47	 50.82 -1    31291..31473    	 -	60	32470713	-	RB84	-	hypothetical protein	
48	 51.82 -1    31507..32739    	 +	410	32470714	-	RB85	-	conserved hypothetical protein	
49	 56.72       32765..34051    	 +	428	32470715	-	RB87	-	hypothetical protein-signal peptide and transmembrane prediction	
50	 53.57       34254..35666    	 +	470	32470716	phoD	RB88	-	probable alkaline phosphatase D [Precursor]	
51	 53.25       35663..36370    	 +	235	32470717	-	RB89	-	hypothetical protein	
52	 53.55       36400..38457    	 -	685	32470718	phoD	RB92	-	probable alkaline phosphatase D [Precursor]	
53	 53.81       38470..39441    	 -	323	32470719	-	RB93	-	hypothetical protein-signal peptide and transmembrane prediction	
54	 52.11       39617..40090    	 -	157	32470720	-	RB95	-	hypothetical protein-transmembrane prediction	
55	 54.21       40275..40571    	 -	98	32470721	-	RB98	-	similar to 50S ribosomal protein L37ae	
56	 52.96       40726..41097    	 -	123	32470722	-	RB100	-	hypothetical protein-transmembrane prediction	
57	 53.33       41251..44415    	 -	1054	32470723	-	RB101	-	probable acylaminoacyl-peptidase	
58	 51.40 -1    44265..44834    	 -	189	32470724	-	RB104	-	hypothetical protein-transmembrane prediction	
59	 53.99       44735..45886    	 +	383	32470725	-	RB105	-	probable cysteine proteinase	
60	 56.30       45883..47262    	 +	459	32470726	-	RB107	-	conserved hypothetical protein	
61	 55.69       47345..49093    	 -	582	32470727	-	RB110	-	iduronate-2-sulfatase	
62	 54.73       49329..50216    	 -	295	32470728	-	RB112	-	hypothetical protein-transmembrane prediction	
63	 55.66       50213..51139    	 -	308	32470729	-	RB115	-	hypothetical protein-signal peptide and transmembrane prediction	
64	 55.90       51136..51525    	 -	129	32470730	-	RB117	-	hypothetical protein-transmembrane prediction	
65	 54.51       51522..52031    	 -	169	32470731	-	RB118	-	hypothetical protein-transmembrane prediction	
66	 53.12       52007..52390    	 -	127	32470732	-	RB120	-	hypothetical protein	
67	 53.60       52395..53687    	 -	430	32470733	-	RB123	-	hypothetical protein-transmembrane prediction	
68	 54.25       53678..54571    	 -	297	32470734	-	RB125	-	hypothetical protein-transmembrane prediction	
69	 56.70       54487..55539    	 -	350	32470735	-	RB127	-	hypothetical protein-transmembrane prediction	
70	 58.50 +1    55536..56747    	 -	403	32470736	gspE	RB128	-	general secretion pathway protein E	
71	 50.88 -1    56777..56890    	 -	37	32470737	-	RB129	-	hypothetical protein	
72	 57.17       56878..58119    	 +	413	32470738	-	RB130	-	hypothetical protein-signal peptide and transmembrane prediction	
73	 56.31       58394..58615    	 -	73	32470739	-	RB132	-	hypothetical protein	
74	 56.10       58617..59468    	 -	283	32470740	-	RB133	-	predicted metalloprotease	
75	 51.52 -1    59440..59604    	 -	54	32470741	-	RB135	-	hypothetical protein	
76	 58.31 +1    59847..60875    	 +	342	32470742	-	RB136	-	conserved hypothetical protein-putative aminomethyltransferase	
77	 55.81       60872..61516    	 +	214	32470743	-	RB138	-	hypothetical protein	
78	 57.79       61578..64541    	 +	987	32470744	-	RB140	-	serine/threonine protein kinase	
79	 56.29       64669..66924    	 -	751	32470745	-	RB142	-	hypothetical protein-transmembrane prediction	
80	 57.98 +1    66870..68273    	 -	467	32470746	-	RB144	-	probable membrane-fusion protein	
81	 56.42       68277..69164    	 -	295	32470747	-	RB146	-	probable cation efflux system	
82	 56.34       69161..71212    	 -	683	32470748	secA	RB148	-	preprotein translocase SecA subunit	
83	 56.02       71197..73215    	 -	672	32470749	-	RB149	-	probable outer membrane channel protein	
84	 56.36       73100..73390    	 +	96	32470750	-	RB150	-	hypothetical protein	
85	 55.56       73233..73403    	 +	56	32470751	-	RB152	-	hypothetical protein	
86	 54.84       73499..81046    	 +	2515	32470752	-	RB154	-	lipoprotein receptor-related protein	
87	 54.39       81043..84024    	 +	993	32470753	-	RB159	-	sensory transduction histidine kinase	
88	 53.49       84027..84284    	 -	85	32470754	-	RB160	-	hypothetical protein	
89	 54.42       84262..85518    	 +	418	32470755	-	RB161	-	response regulator	
90	 58.04 +1    85677..86603    	 -	308	32470756	-	RB162	-	SAM dependent methyltransferase	
91	 56.09       87060..87560    	 +	166	32470757	-	RB164	-	hypothetical protein	
92	 53.42       87557..88726    	 -	389	32470758	-	RB165	-	transposase	
93	 55.15       88683..88847    	 +	54	32470759	-	RB166	-	hypothetical protein	
94	 56.59       88901..89317    	 +	138	32470760	-	RB168	-	transposase	
95	 48.80 -2    89333..89623    	 +	96	32470761	-	RB170	-	probable transposase	
96	 53.58       89626..90504    	 +	292	32470762	-	RB171	-	putative transposase	
97	 54.64       90494..91441    	 +	315	32470763	-	RB172	-	probable transposase	
98	 50.00 -1    91448..91585    	 +	45	32470764	-	RB174	-	hypothetical protein	
99	 51.20 -1    91582..91956    	 +	124	32470765	-	RB175	-	hypothetical protein	
100	 53.99       92068..92493    	 -	141	32470766	-	RB177	-	hypothetical protein-signal peptide and transmembrane prediction	

 
 54.91 MEAN 
 
 2.96  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.