IslandPath Analysis: Photorhabdus luminescens



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.10   STD DEV: 5.83
Photorhabdus luminescens subsp. laumondii TTO1, complete genome - 0..5688987
4683 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 44.20      234..1622     	 +	462	37524033	dnaA	plu0001	-	Chromosomal replication initiator protein DnaA	
2	 45.59        1627..2727     	 +	366	37524034	dnaN	plu0002	-	DNA polymerase III, beta chain	
3	 47.34        2749..3840     	 +	363	37524035	recF	plu0003	-	DNA replication and repair protein	
4	 45.05        3860..6274     	 +	804	37524036	gyrB	plu0004	-	DNA gyrase subunit B	
5	 35.00 -1     6415..6894     	 +	159	37524037	-	plu0005	-	hypothetical protein	
6	 32.28 -1     8013..8768     	 -	251	37524038	-	plu0006	-	hypothetical protein	
7	 43.78        8935..10044    	 -	369	37524039	asd	plu0007	-	aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH)	
8	 40.09       10251..10472    	 -	73	37524040	ogrK	plu0008	-	Ogr protein	
9	 43.00       10549..11634    	 -	361	37524041	-	plu0009	-	hypothetical protein	
10	 43.66       11631..12095    	 -	154	37524042	-	plu0010	-	hypothetical protein	
11	 43.54       12098..14536    	 -	812	37524043	-	plu0011	-	hypothetical protein	
12	 50.00 +1    14517..14636    	 -	39	37524044	-	plu0012	-	hypothetical protein	
13	 49.37 +1    14651..14968    	 -	105	37524045	-	plu0013	-	hypothetical protein	
14	 46.71       14995..15510    	 -	171	37524046	-	plu0014	-	hypothetical protein	
15	 45.87       15521..16693    	 -	390	37524047	-	plu0015	-	hypothetical protein	
16	 33.82 -1    16908..17114    	 +	68	37524048	-	plu0016	-	hypothetical protein	
17	 41.67       17111..17662    	 +	183	37524049	-	plu0017	-	hypothetical protein	
18	 38.79       17678..18208    	 +	176	37524050	-	plu0018	-	hypothetical protein	
19	 40.87       18438..19034    	 -	198	37524051	-	plu0019	-	hypothetical protein	
20	 45.19       19034..19522    	 -	162	37524052	-	plu0020	-	hypothetical protein	
21	 42.29       19522..20649    	 -	375	37524053	-	plu0021	-	hypothetical protein	
22	 46.50       20646..21260    	 -	204	37524054	-	plu0022	-	hypothetical protein	
23	 44.24       21253..22251    	 -	332	37524055	-	plu0023	-	hypothetical protein	
24	 48.83       22256..22597    	 -	113	37524056	-	plu0024	-	hypothetical protein	
25	 43.06       22597..23439    	 -	280	37524057	-	plu0025	-	hypothetical protein	
26	 39.71       23936..24139    	 -	67	37524058	-	plu0026	-	hypothetical protein	
27	 38.25       24422..24604    	 -	60	37524059	-	plu0027	-	hypothetical protein	
28	 36.26 -1    24983..25597    	 +	204	37524060	-	plu0028	-	hypothetical protein	
29	 36.47 -1    25880..26452    	 -	190	37524061	hin	plu0029	-	DNA-invertase HIN	
30	 38.67       26386..26535    	 +	49	37524062	-	plu0030	-	hypothetical protein	
31	 40.06       26532..27542    	 +	336	37524063	-	plu0031	-	hypothetical protein	
32	 32.75 -1    27552..27893    	 +	113	37524064	-	plu0032	-	hypothetical protein	
33	 37.95       28312..28896    	 -	194	37524065	-	plu0033	-	hypothetical protein	
34	 38.92       28944..29999    	 -	351	37524066	-	plu0034	-	hypothetical protein	
35	 39.01       30414..30554    	 -	46	37524067	rpmJ	plu0035	-	50S ribosomal protein L36	
36	 40.78       30574..30828    	 -	84	37524068	rpmE	plu0036	-	50S ribosomal protein L31	
37	 43.01       30977..32806    	 -	609	37524069	glmS	plu0037	-	Glucosamine-fructose-6-phosphate aminotransferase [isomerizing] (hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (glucosamine-6-phosphate synthase)	
38	 41.78       32914..34287    	 -	457	37524070	glmU	plu0038	-	UDP-N-acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1-phosphate uridyltransferase)	
39	 45.39       34416..34838    	 -	140	37524071	atpC	plu0039	-	ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit)	
40	 47.22       34860..36242    	 -	460	37524072	atpD	plu0040	-	ATP synthase beta chain	
41	 47.69       36277..37140    	 -	287	37524073	atpG	plu0041	-	ATP synthase gamma chain	
42	 46.24       37199..38740    	 -	513	37524074	atpA	plu0042	-	ATP synthase alpha chain	
43	 44.19       38755..39288    	 -	177	37524075	atpH	plu0043	-	ATP synthase delta chain	
44	 47.13       39301..39771    	 -	156	37524076	atpF	plu0044	-	ATP synthase B chain	
45	 50.83 +1    39830..40069    	 -	79	37524077	atpE	plu0045	-	ATP synthase C chain (Lipid-binding protein) (Dicyclohexylcarbodiimide-binding protein)	
46	 42.91       40123..40947    	 -	274	37524078	atpB	plu0046	-	ATP synthase A chain (Protein 6)	
47	 42.06       40978..41355    	 -	125	37524079	atpI	plu0047	-	ATP synthase protein I	
48	 41.38       41966..42586    	 -	206	37524080	gidB	plu0048	-	Glucose inhibited division protein B	
49	 43.07       42600..44489    	 -	629	37524081	gidA	plu0049	-	Glucose inhibited division protein A	
50	 43.99       44870..45310    	 -	146	37524082	mioC	plu0050	-	Protein mioC, involved in modulation of initiation at oriC, initiation of chromosome replication	
51	 39.83       45402..45863    	 -	153	37524083	asnC	plu0051	-	Regulatory protein AsnC	
52	 43.81       46030..47022    	 +	330	37524084	asnA	plu0052	-	Aspartate--ammonia ligase (Asparagine synthetase A)	
53	 38.89       47029..48486    	 -	485	37524085	-	plu0053	-	hypothetical protein	
54	 37.04 -1    48491..50002    	 -	503	37524086	-	plu0054	-	hypothetical protein	
55	 36.90 -1    50255..50674    	 +	139	37524087	rbsD	plu0055	-	High affinity ribose transport protein RbsD	
56	 39.71       50682..52187    	 +	501	37524088	rbsA	plu0056	-	Ribose transport ATP-binding protein RbsA	
57	 39.40       52194..53165    	 +	323	37524089	rbsC	plu0057	-	Ribose transport system permease protein RbsC	
58	 41.53       53190..54080    	 +	296	37524090	rbsB	plu0058	-	D-ribose-binding periplasmic protein precursor RbsB	
59	 41.83       54144..55073    	 +	309	37524091	rbsK	plu0059	-	ribokinase	
60	 40.12       55076..56077    	 +	333	37524092	rbsR	plu0060	-	Ribose operon repressor	
61	 40.16       56074..57465    	 -	463	37524093	-	plu0061	-	hypothetical protein	
62	 57.10 +2    63666..63968    	 +	100	37524094	-	plu0064	-	hypothetical protein	
63	 62.20 +2    63962..64297    	 +	111	37524095	-	plu0065	-	hypothetical protein	
64	 30.73 -2    67419..68492    	 -	357	37524096	-	plu0070	-	hypothetical protein	
65	 25.19 -2    68492..69031    	 -	179	37524097	-	plu0071	-	hypothetical protein	
66	 41.82       69280..70929    	 -	549	37524098	-	plu0072	-	hypothetical protein	
67	 38.78       70926..71237    	 -	103	37524099	-	plu0073	-	hypothetical protein	
68	 44.33       71302..73257    	 -	651	37524100	acs	plu0074	-	acetyl-coenzyme A synthetase (acetate--COA ligase) (acyl-activating enzyme)	
69	 43.38       73631..74257    	 +	208	37524101	sodA	plu0075	-	superoxide dismutase [Mn]	
70	 42.71       74376..75047    	 +	223	37524102	-	plu0076	-	hypothetical protein	
71	 49.24 +1    75432..76022    	 +	196	37524103	-	plu0077	-	hypothetical protein	
72	 46.27       76015..76215    	 +	66	37524104	-	plu0078	-	hypothetical protein	
73	 50.62 +1    76226..76705    	 -	159	37524105	-	plu0079	-	hypothetical protein	
74	 53.33 +1    76707..77456    	 -	249	37524106	-	plu0080	-	hypothetical protein	
75	 51.19 +1    77425..78348    	 -	307	37524107	-	plu0081	-	hypothetical protein	
76	 47.62       78376..78669    	 -	97	37524108	-	plu0082	-	hypothetical protein	
77	 36.49 -1    78885..79106    	 +	73	37524109	-	plu0083	-	hypothetical protein	
78	 45.18       79372..80409    	 -	345	37524110	trpS	plu0084	-	tryptophanyl-tRNA synthetase (tryptophan--tRNA ligase) (TRPRS)	
79	 44.26       80414..81118    	 -	234	37524111	gph	plu0085	-	phosphoglycolate phosphatase (PGP)	
80	 44.20       81108..81788    	 -	226	37524112	rpe	plu0086	-	ribulose-phosphate 3-epimerase (pentose-5-phosphate 3-epimerase) (PPE) (R5P3E)	
81	 41.70       81849..82661    	 -	270	37524113	dam	plu0087	-	DNA adenine methylase (Deoxyadenosyl-methyltransferase)	
82	 40.88       82746..83672    	 -	308	37524114	damX	plu0088	-	Putative membrane protein DamX, interferes with cell division	
83	 45.78       83965..85065    	 -	366	37524115	aroB	plu0089	-	3-dehydroquinate synthase	
84	 46.74       85113..85634    	 -	173	37524116	aroK	plu0090	-	shikimate kinase I (SKI)	
85	 40.68       86004..87038    	 -	344	37524117	-	plu0091	-	hypothetical protein	
86	 39.74       87031..87576    	 -	181	37524118	-	plu0092	-	hypothetical protein	
87	 39.46       87563..88117    	 -	184	37524119	-	plu0093	-	hypothetical protein	
88	 45.73       88117..88947    	 -	276	37524120	-	plu0094	-	hypothetical protein	
89	 46.42       89067..91595    	 +	842	37524121	mrcA	plu0095	-	penicillin-binding protein 1A (PBP-1a) (PBP1a) (penicillin-binding protein A) [Includes: Penicillin-insensitive transglycosylase (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (DD-transpeptidase)]	
90	 43.35       91639..92187    	 -	182	37524122	nudE	plu0096	-	ADP compounds hydrolase nudE	
91	 39.76       92664..94796    	 +	710	37524123	-	plu0097	-	hypothetical protein	
92	 44.12       94864..95280    	 +	138	37524124	hslR	plu0098	-	Heat shock protein 15 (HSP15)	
93	 42.84       95303..96175    	 +	290	37524125	hslO	plu0099	-	33 kDa chaperonin (Heat shock protein 33) (HSP33)	
94	 45.56       96415..98034    	 +	539	37524126	pckA	plu0100	-	phosphoenolpyruvate carboxykinase [ATP]	
95	 43.39       98082..98777    	 -	231	37524127	-	plu0101	-	hypothetical protein	
96	 35.46 -1    99468..100832   	 +	454	37524128	-	plu0102	-	hypothetical protein	
97	 34.29 -1   100832..101458   	 +	208	37524129	-	plu0103	-	hypothetical protein	
98	 39.19      101566..102060   	 +	164	37524130	-	plu0104	-	hypothetical protein	
99	 48.03      102764..106036   	 +	1090	37524131	pulA	plu0105	-	alpha-dextrin endo-1,6-alpha-glucosidase precursor (pullulanase precursor)	
100	 45.72      106391..107851   	 +	486	37524132	-	plu0106	-	hypothetical protein	

 
 43.10 MEAN 
 
 5.83  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.