IslandPathversion 1.0

IslandPath Analysis: Parachlamydia sp.UWE25



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.64 STD DEV: 3.37
Parachlamydia sp. UWE25, complete genome - 0..2414465
2031 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 33.80      123..338      	 -	71	46445635	-	pc0001	-	unknown protein	
2	 34.74         462..746      	 +	94	46445636	-	pc0002	-	unknown protein	
3	 34.11        1055..4024     	 +	989	46445637	-	pc0003	-	hypothetical protein	
4	 35.74        4428..5840     	 +	470	46445638	-	pc0004	-	hypothetical protein	
5	 37.96        5907..8303     	 -	798	46445639	-	pc0005	-	conserved hypothetical protein	
6	 30.99 -1     9037..9249     	 -	70	46445640	-	pc0006	-	unknown protein	
7	 34.62        9395..11098    	 -	567	46445641	-	pc0007	-	conserved hypothetical protein	
8	 33.89       11759..15346    	 +	1195	46445642	recC	pc0008	-	putative exodeoxyribonuclease V gamma chain	
9	 34.22       15358..18858    	 +	1166	46445643	recB	pc0009	-	putative exodeoxyribonuclease V beta chain	
10	 34.67       18855..20723    	 +	622	46445644	recD	pc0010	-	putative exodeoxyribonuclease V alpha chain recD	
11	 28.72 -2    21414..21608    	 +	64	46445645	-	pc0011	-	unknown protein	
12	 32.88       21646..23628    	 -	660	46445646	-	pc0012	-	unknown protein	
13	 37.72       23912..25006    	 +	364	46445647	ssuA	pc0013	-	putative substrate-binding protein of aliphatic sulfonate ABC transporter	
14	 35.98       24993..25784    	 +	263	46445648	ssuB	pc0014	-	probable ATP-binding component of ABC transporters	
15	 38.10       25781..26557    	 +	258	46445649	ssuC	pc0015	-	putative integral membrane components of the ABC transporters	
16	 34.16       26732..28063    	 -	443	46445650	glmU	pc0016	-	putative bifunctional protein UDP-N-acetylglucosamine pyrophosphorylases, Glucosamine-1-phosphate N-acetyltransferase	
17	 36.67       28522..29571    	 -	349	46445651	rfaF	pc0017	-	putative ADP-heptose--lipopolysaccharide heptosyltransferase II	
18	 31.73 -1    29961..31583    	 +	540	46445652	-	pc0018	-	hypothetical protein	
19	 38.07       31580..32086    	 +	168	46445653	ruvC	pc0019	-	probable Holliday junction endodeoxyribonuclease	
20	 36.96       32105..32710    	 +	201	46445654	ruvA	pc0020	-	probable Holliday junction DNA helicase	
21	 37.85       32733..33374    	 -	213	46445655	nth	pc0021	-	probable endonuclease III (UV endonuclease)	
22	 37.40       33359..34735    	 -	458	46445656	thdF	pc0022	-	probable GTP-binding protein in thiophene and furan oxidation	
23	 34.31       34867..35784    	 +	305	46445657	psdD	pc0023	-	putative phosphatidylserine decarboxylase proenzyme	
24	 36.02       35903..36460    	 -	185	46445658	ahpC	pc0024	-	probable proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA)	
25	 38.23       36689..37321    	 -	210	46445659	-	pc0025	-	conserved hypothetical protein	
26	 35.78       37531..42066    	 -	1511	46445660	-	pc0026	-	conserved hypothetical protein	
27	 37.48       42300..43094    	 +	264	46445661	prmA	pc0027	-	putative ribosomal protein L11 methyltransferase	
28	 31.13 -1    43555..43917    	 +	120	46445662	-	pc0028	-	unknown protein	
29	 36.51       44228..44479    	 -	83	46445663	-	pc0029	-	conserved hypothetical protein	
30	 40.98 +1    44688..46361    	 -	557	46445664	groEl	pc0030	-	probable 60 kDa chaperonin (GroEL)	
31	 37.36       46386..46733    	 -	115	46445665	groEs	pc0031	-	probable chaperonin groES	
32	 35.03       46824..48059    	 -	411	46445666	-	pc0032	-	conserved hypothetical protein	
33	 36.95       48362..52009    	 +	1215	46445667	putA	pc0033	-	putative bifunctional protein (proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase)	
34	 36.00       51894..54179    	 +	761	46445668	mutD	pc0034	-	probable ATP-dependent DNA helicase	
35	 38.00       54446..54745    	 +	99	46445669	-	pc0035	-	conserved hypothetical protein	
36	 37.11       54770..55351    	 -	193	46445670	-	pc0036	-	unknown protein	
37	 33.97       56119..57060    	 +	313	46445671	-	pc0037	-	putative metalloprotease	
38	 32.22 -1    57233..60094    	 -	953	46445672	-	pc0038	-	conserved hypothetical protein	
39	 34.20       60861..61208    	 +	115	46445673	-	pc0039	-	unknown protein	
40	 37.72       61805..65227    	 -	1140	46445674	-	pc0040	-	hypothetical protein	
41	 37.41       65317..68748    	 -	1143	46445675	-	pc0041	-	hypothetical protein	
42	 38.71       68835..72272    	 -	1145	46445676	-	pc0042	-	hypothetical protein	
43	 35.89       72654..73982    	 -	442	46445677	-	pc0043	-	unknown protein	
44	 37.50       74061..77489    	 -	1142	46445678	-	pc0044	-	hypothetical protein	
45	 38.47       77584..81045    	 -	1153	46445679	-	pc0045	-	hypothetical protein	
46	 37.72       81362..84643    	 -	1093	46445680	-	pc0046	-	hypothetical protein	
47	 42.16 +1    85064..85369    	 +	101	46445681	-	pc0047	-	unknown protein	
48	 33.40       85501..87096    	 -	531	46445682	-	pc0048	-	hypothetical protein	
49	 30.54 -1    88089..88946    	 -	285	46445683	-	pc0049	-	unknown protein	
50	 35.33       89737..90789    	 -	350	46445684	-	pc0050	-	unknown protein	
51	 37.44       91605..95060    	 -	1151	46445685	-	pc0051	-	hypothetical protein	
52	 42.81 +2    95214..96353    	 -	379	46445686	-	pc0052	-	hypothetical protein	
53	 35.73       96456..98582    	 -	708	46445687	-	pc0053	-	hypothetical protein	
54	 39.03 +1    98629..101544   	 -	971	46445688	-	pc0054	-	hypothetical protein	
55	 34.71      101504..102013   	 -	169	46445689	-	pc0055	-	unknown protein	
56	 35.26      102365..103714   	 -	449	46445690	-	pc0056	-	unknown protein	
57	 37.53      103747..107181   	 -	1144	46445691	-	pc0057	-	hypothetical protein	
58	 38.95      107456..110497   	 -	1013	46445692	-	pc0058	-	hypothetical protein	
59	 37.98      110545..113988   	 -	1147	46445693	-	pc0059	-	hypothetical protein	
60	 32.75      114884..115738   	 -	284	46445694	-	pc0060	-	putative extracellular metalloproteinase	
61	 34.69      116938..117600   	 -	220	46445695	-	pc0061	-	hypothetical protein	
62	 34.74      117922..118632   	 -	236	46445696	-	pc0062	-	unknown protein	
63	 34.35      119309..120196   	 -	295	46445697	-	pc0063	-	hypothetical protein	
64	 34.72      121198..122781   	 -	527	46445698	-	pc0064	-	unknown protein	
65	 33.88      123045..123593   	 -	182	46445699	-	pc0065	-	hypothetical protein	
66	 38.17      123545..124453   	 -	302	46445700	-	pc0066	-	conserved hypothetical protein	
67	 32.99      124467..125639   	 -	390	46445701	-	pc0067	-	hypothetical protein	
68	 29.51 -1   125921..126103   	 -	60	46445702	-	pc0068	-	hypothetical protein	
69	 34.48      126400..127620   	 -	406	46445703	aspC	pc0069	-	probable aspartate transaminase	
70	 35.00      127768..128007   	 -	79	46445704	-	pc0070	-	unknown protein	
71	 37.86      128482..131085   	 -	867	46445705	topA	pc0071	-	putative DNA topoisomerase I	
72	 34.62      131167..132258   	 -	363	46445706	dprA	pc0072	-	putative protein required for chromosomal DNA transformation	
73	 33.90      132397..133455   	 -	352	46445707	aroB	pc0073	-	putative 3-dehydroquinate synthase	
74	 39.84 +1   133606..133851   	 -	81	46445708	-	pc0074	-	unknown protein	
75	 38.62      133845..134090   	 +	81	46445709	-	pc0075	-	unknown protein	
76	 32.93      134284..135036   	 -	250	46445710	-	pc0076	-	unknown protein	
77	 35.63      135333..136115   	 +	260	46445711	parB	pc0077	-	putative chromosome partitioning protein	
78	 35.53      136133..138322   	 +	729	46445712	copA	pc0078	-	putative copper-transporting ATPase	
79	 35.57      138297..139280   	 +	327	46445713	-	pc0079	-	probable UDP-glucuronat epimerase	
80	 30.22 -1   139323..139547   	 +	74	46445714	-	pc0080	-	unknown protein	
81	 31.95 -1   139592..140242   	 +	216	46445715	-	pc0081	-	unknown protein	
82	 37.00      140790..142289   	 -	499	46445716	-	pc0082	-	conserved hypothetical protein	
83	 38.82      142294..143295   	 -	333	46445717	gpsA	pc0083	-	stongly putative NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	
84	 32.14 -1   143526..144194   	 -	222	46445718	-	pc0084	-	unknown protein	
85	 35.83      144259..144858   	 -	199	46445719	-	pc0085	-	conserved hypothetical protein	
86	 34.58      145079..147250   	 -	723	46445720	-	pc0086	-	conserved hypothetical protein	
87	 35.37      147770..148210   	 +	146	46445721	-	pc0087	-	unknown protein	
88	 34.17      148548..149741   	 +	397	46445722	-	pc0088	-	hypothetical protein	
89	 35.32      149879..150937   	 +	352	46445723	mutY	pc0089	-	putative A/G-specific adenine glycosylase, mutY	
90	 38.89      151176..151373   	 +	65	46445724	-	pc0090	-	unknown protein	
91	 33.54      151673..152161   	 -	162	46445725	bcp	pc0091	-	putative bacterioferritin comigratory protein (BCP)	
92	 37.00      152383..153417   	 +	344	46445726	hemB	pc0092	-	probable porphobilinogen synthase (delta-aminolevulinic acid dehydratase, (ALAD)), hemB	
93	 35.88      153464..155626   	 -	720	46445727	-	pc0093	-	hypothetical protein	
94	 33.98      155866..157098   	 +	410	46445728	napA	pc0094	-	putative Na(+)/H(+) antiporter	
95	 36.62      157177..158577   	 +	466	46445729	nqrA	pc0095	-	putative component of alpha subunit of Na+-translocating NADH-quinone reductase (NQR)	
96	 33.45      158570..159394   	 -	274	46445730	oppF	pc0096	-	probable ATP binding protein, component of oligopeptide permease, oppF	
97	 39.47 +1   159391..160416   	 -	341	46445731	oppD	pc0097	-	probable ATP binding protein, component of oligopeptide permease, oppD	
98	 34.29      160575..161306   	 +	243	46445732	-	pc0098	-	conserved hypothetical protein	
99	 37.22      161360..162775   	 +	471	46445733	-	pc0099	-	conserved hypothetical protein	
100	 35.92      162813..163391   	 +	192	46445734	-	pc0100	-	unknown protein	

 
 35.64 MEAN 
 
 3.37  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.