IslandPath Analysis: Onion yellows phytoplasma



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.56   STD DEV: 4.59
Onion yellows phytoplasma OY-M, complete genome - 0..860631
754 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 23.16        1..1524     	 +	507	39938487	dnaA	-	-	chromosomal replication initiator protein	
2	 21.11 -1     1831..2967     	 +	378	39938488	dnaN	-	-	DNA polymerase III beta subunit	
3	 22.86 -1     4447..4866     	 +	139	39938489	PAM003	-	-	hypothetical protein	
4	 22.71 -1     4948..5220     	 +	90	39938490	PAM004	-	-	hypothetical protein	
5	 19.18 -2     5467..6222     	 -	251	39938491	pgpB	-	-	membrane-associated phospholipid phosphatase	
6	 17.85 -2     6431..7063     	 -	210	39938492	PAM006	-	-	hypothetical protein	
7	 28.09        7660..8976     	 +	438	39938493	folC	-	-	folylpolyglutamate synthase	
8	 25.00       10428..11675    	 +	415	39938494	rfaG	-	-	1,2-diacylglycerol 3-glucosyltransferase	
9	 26.25       12171..12509    	 +	112	39938495	rpsF	-	-	ribosomal protein S6	
10	 28.41       12524..12868    	 +	114	39938496	ssb	-	-	single-stranded DNA-binding protein	
11	 27.92       13006..13245    	 +	79	39938497	rpsR	-	-	ribosomal protein S18	
12	 29.53       13316..15889    	 +	857	39938498	PAM012	-	-	exopolyphosphatase-related protein	
13	 29.54       15886..17229    	 +	447	39938499	dnaB	-	-	replicative DNA helicase	
14	 32.48       17300..18355    	 +	351	39938500	prfA	-	-	protein chain release factor A	
15	 29.21       18448..19005    	 +	185	39938501	sua5	-	-	translation factor	
16	 23.97 -1    19044..20015    	 -	323	39938502	holA	-	-	DNA polymerase III delta subunit	
17	 31.98       20275..20865    	 +	196	39938503	PAM017	-	-	conserved hypothetical protein	
18	 30.15       21671..23713    	 +	680	39938504	valS	-	-	valyl-tRNA synthetase	
19	 27.99       23899..24366    	 +	155	39938505	PAM019	-	-	conserved hypothetical protein	
20	 28.58       24424..26190    	 +	588	39938506	cbiO	-	-	ABC-type cobalt transport system, ATPase component	
21	 27.32       27755..28120    	 +	121	39938507	PAM021	-	-	hypothetical protein	
22	 30.99       28890..29273    	 +	127	39938508	dppB	-	-	ABC-type dipeptide/oligopeptide transport system, permease component	
23	 27.10       29578..30684    	 +	368	39938509	PAM023	-	-	hypothetical protein	
24	 30.30       30946..31737    	 +	263	39938510	PAM024	-	-	conserved hypothetical protein	
25	 31.12       32258..33295    	 +	345	39938511	dppD	-	-	ABC-type dipeptide/oligopeptide transport system, ATPase component	
26	 26.19       33626..34087    	 +	153	39938512	oppF	-	-	ABC-type dipeptide/oligopeptide transport system, ATPase component	
27	 25.43       34179..37277    	 -	1032	39938513	PAM027	-	-	conserved hypothetical protein	
28	 21.99 -1    37635..38057    	 +	140	39938514	ibpA	-	-	molecular chaperone	
29	 31.36       38180..38635    	 -	151	39938515	PAM029	-	-	hypothetical protein	
30	 33.01       38845..41607    	 -	920	39938516	mgtA	-	-	cation transport ATPase	
31	 28.12       42625..43755    	 +	376	39938517	PAM031	-	-	hypothetical protein	
32	 23.35 -1    44868..45518    	 +	216	39938518	PAM032	-	-	conserved hypothetical protein	
33	 22.66 -1    45800..46258    	 +	152	39938519	PAM033	-	-	hypothetical protein	
34	 23.89 -1    46529..47068    	 +	179	39938520	PAM034	-	-	hypothetical protein	
35	 26.55       47948..48301    	 +	117	39938521	PAM035	-	-	hypothetical protein	
36	 29.26       48277..48939    	 +	220	39938522	PAM036	-	-	conserved hypothetical protein	
37	 23.65 -1    48879..49766    	 +	295	39938523	smc	-	-	chromosome segregation ATPase homolog	
38	 30.77       50195..50506    	 +	103	39938524	PAM038	-	-	hypothetical protein	
39	 26.14       50922..52589    	 +	555	39938525	PAM039	-	-	conserved hypothetical protein	
40	 26.07       52707..53312    	 +	201	39938526	fliA	-	-	DNA-directed RNA polymerase specialized sigma subunit	
41	 28.18       53544..53873    	 +	109	39938527	ssb	-	-	single-stranded DNA-binding protein	
42	 27.58       54352..55011    	 +	219	39938528	dam	-	-	site-specific DNA methylase	
43	 26.80       55120..55410    	 +	96	39938529	himA	-	-	bacterial nucleoid DNA-binding protein	
44	 29.43       55772..56566    	 +	264	39938530	PAM044	-	-	hypothetical protein	
45	 32.32       56624..57805    	 +	393	39938531	PAM045	-	-	conserved hypothetical protein	
46	 29.08       58212..59057    	 +	281	39938532	PAM046	-	-	hypothetical protein	
47	 29.68       58996..60171    	 +	391	39938533	PAM047	-	-	conserved hypothetical protein	
48	 34.16 +1    60238..60963    	 +	241	39938534	PAM048	-	-	hypothetical protein	
49	 18.78 -2    61011..61388    	 +	125	39938535	PAM049	-	-	hypothetical protein	
50	 38.29 +2    61925..62146    	 +	73	39938536	PAM050	-	-	conserved hypothetical protein	
51	 19.41 -1    62166..63443    	 +	425	39938537	PAM051	-	-	hypothetical protein	
52	 20.82 -1    63851..65281    	 +	476	39938538	PAM052	-	-	hypothetical protein	
53	 20.40 -1    65858..66352    	 +	164	39938539	PAM053	-	-	hypothetical protein	
54	 37.53 +1    67342..69651    	 +	769	39938540	nrdA	-	-	ribonucleotide reductase alpha subunit	
55	 32.29       70037..71089    	 +	350	39938541	nrdF	-	-	ribonucleotide reductase beta subunit	
56	 24.56       73506..73904    	 +	132	39938542	PAM056	-	-	hypothetical protein	
57	 19.87 -1    74018..74953    	 +	311	39938543	PAM057	-	-	hypothetical protein	
58	 23.51 -1    75777..76295    	 +	172	39938544	mscL	-	-	large-conductance mechanosensitive channel	
59	 26.49       76501..78225    	 +	574	39938545	mdlB	-	-	ABC-type multidrug/protein/lipid transport system, ATPase component	
60	 25.71       80717..81424    	 +	235	39938546	PAM060	-	-	hypothetical protein	
61	 28.71       81782..82084    	 +	100	39938547	PAM061	-	-	hypothetical protein	
62	 31.69       83133..83315    	 +	60	39938548	PAM062	-	-	hypothetical protein	
63	 26.46       83594..83884    	 +	96	39938549	himA	-	-	bacterial nucleoid DNA-binding protein	
64	 31.34       84325..86229    	 +	634	39938550	hflB	-	-	ATP-dependent Zn protease	
65	 20.15 -1    86315..86587    	 +	90	39938551	PAM065	-	-	conserved hypothetical protein	
66	 29.50       86592..87452    	 +	286	39938552	PAM066	-	-	hypothetical protein	
67	 30.77       87922..88545    	 +	207	39938553	PAM067	-	-	conserved hypothetical protein	
68	 31.13       88612..89337    	 +	241	39938554	PAM068	-	-	hypothetical protein	
69	 17.81 -2    89402..90103    	 +	233	39938555	PAM069	-	-	hypothetical protein	
70	 22.69 -1    90298..90870    	 +	190	39938556	PAM070	-	-	hypothetical protein	
71	 33.02       91415..92062    	 +	215	39938557	PAM071	-	-	conserved hypothetical protein	
72	 30.77       92123..92512    	 +	129	39938558	PAM072	-	-	hypothetical protein	
73	 26.95       92749..93516    	 +	255	39938559	PAM073	-	-	hypothetical protein	
74	 29.73       93535..95034    	 +	499	39938560	dnaB	-	-	replicative DNA helicase	
75	 27.08       95046..95924    	 +	292	39938561	PAM075	-	-	hypothetical protein	
76	 27.36       99183..100070   	 +	295	39938562	PAM076	-	-	hypothetical protein	
77	 25.67      100067..101188   	 +	373	39938563	artM	-	-	ABC-type amino acid transport system, permease component	
78	 26.85      101697..103502   	 +	601	39938564	artM	-	-	ABC-type amino acid transport system, permease component	
79	 28.75      103752..104231   	 +	159	39938565	glnQ	-	-	ABC-type polar amino acid transport system, ATPase component	
80	 26.42      104409..104654   	 +	81	39938566	PAM080	-	-	hypothetical protein	
81	 27.20      105231..105491   	 +	86	39938567	rpsT	-	-	ribosomal protein S20	
82	 26.57      105664..105870   	 -	68	39938568	PAM082	-	-	hypothetical protein	
83	 32.31      106430..107704   	 +	424	39938569	serS	-	-	seryl-tRNA synthetase	
84	 31.17      107898..108221   	 +	107	39938570	PAM084	-	-	hypothetical protein	
85	 33.95 +1   108383..109348   	 +	321	39938571	PAM085	-	-	conserved hypothetical protein	
86	 33.04      109503..109838   	 +	111	39938572	rplU	-	-	ribosomal protein L21	
87	 27.98      109844..110179   	 +	111	39938573	PAM087	-	-	conserved hypothetical protein	
88	 35.13 +1   110181..110459   	 +	92	39938574	rpmA	-	-	ribosomal protein L27	
89	 32.70      110486..111754   	 +	422	39938575	obg	-	-	conserved hypothetical protein	
90	 22.39 -1   112097..112297   	 +	66	39938576	gepA	-	-	uncharacterized phage-associated protein	
91	 25.59      113366..114295   	 -	309	39938577	PAM091	-	-	hypothetical protein	
92	 30.19      115631..116776   	 +	381	39938578	znuA	-	-	ABC-type Mn/Zn transport system, periplasmic Mn/Zn-binding protein	
93	 30.46      116807..117571   	 +	254	39938579	znuC	-	-	ABC-type Mn/Zn transport system, ATPase component	
94	 27.92      117672..119831   	 +	719	39938580	znuB	-	-	ABC-type Mn/Zn transport system, permease component	
95	 26.49      120521..121441   	 +	306	39938581	PAM095	-	-	hypothetical protein	
96	 26.53      121578..123077   	 +	499	39938582	phnL	-	-	ABC-type transport system, involved in lipoprotein release, ATPase component	
97	 29.95      123489..124316   	 +	275	39938583	nlpA	-	-	ABC-type uncharacterized transport system, periplasmic component	
98	 30.79      124440..124871   	 +	143	39938584	PAM098	-	-	conserved hypothetical protein	
99	 29.38      124840..125193   	 +	117	39938585	PAM099	-	-	hypothetical protein	
100	 28.08      125336..125773   	 +	145	39938586	iscU	-	-	nifU-like protein	

 
 28.56 MEAN 
 
 4.59  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.