IslandPath Analysis: Nitrosomonas europaea



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.82   STD DEV: 4.40
Nitrosomonas europaea ATCC 19718, complete genome - 0..2812094
2461 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 48.84      211..1590     	 +	459	30248032	dnaA	NE0001	-	dnaA; chromosomal replication initiator protein	
2	 48.66        1791..2912     	 +	373	30248033	dnaN	NE0002	-	DNA polymerase III, beta chain	
3	 49.71        2961..5390     	 +	809	30248034	gyrB	NE0003	-	DNA gyrase, subunit B:DNA topoisomerase II gyrB	
4	 52.93        5413..5856     	 +	147	30248035	-	NE0004	-	conserved hypothetical protein	
5	 50.27        5907..6638     	 +	243	30248036	-	NE0005	-	possible 16S pseudouridylate synthase	
6	 44.44 -1     7350..7673     	 +	107	30248037	fdxA	NE0006	-	7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain	
7	 50.28        7717..8076     	 +	119	30248038	-	NE0007	-	hypothetical protein	
8	 53.13        8100..11564    	 -	1154	30248039	mfd	NE0008	-	mfd: transcription-repair coupling factor	
9	 53.61       11591..12892    	 -	433	30248040	-	NE0009	-	MgtC family	
10	 53.80       12864..14627    	 -	587	30248041	recJ	NE0010	-	recJ: single-stranded-DNA-specific exonuclease	
11	 50.92       14771..15367    	 -	198	30248042	cyp	NE0011	-	cytochrome P460 precursor	
12	 53.53       15451..16371    	 -	306	30248043	trpC	NE0012	-	Indole-3-glycerol phosphate synthase	
13	 57.41 +1    16373..17398    	 -	341	30248044	trpD	NE0013	-	phosphoribosylanthranilate transferase	
14	 50.17       17395..17994    	 -	199	30248045	trpG	NE0014	-	trpG; panthranilate synthase component II (glutamine amido-transferase) protein	
15	 49.40       18115..19614    	 +	499	30248046	yfhK	NE0015	-	Sensory transduction histidine kinases	
16	 43.09 -1    19611..20153    	 +	180	30248047	-	NE0016	-	hypothetical protein	
17	 51.68       20166..21533    	 +	455	30248048	yfhA	NE0017	-	putative transcriptional regulator of two-component regulator protein	
18	 52.24       21543..22748    	 -	401	30248049	-	NE0018	-	PDZ domain (also known as DHR or GLGF)	
19	 55.50 +1    22874..26788    	 -	1304	30248050	purL	NE0019	-	AIR synthase related protein	
20	 57.91 +1    26860..28377    	 +	505	30248051	-	NE0020	-	possible sugar kinase	
21	 51.05       28652..29176    	 +	174	30248052	-	NE0021	-	conserved hypothetical protein	
22	 55.53 +1    29244..30401    	 -	385	30248053	-	NE0022	-	alanine dehydrogenase	
23	 49.02       30420..31184    	 -	254	30248054	xthA1	NE0023	-	Exodeoxyribonuclease III:Exodeoxyribonuclease III xth	
24	 45.53 -1    31294..31662    	 +	122	30248055	-	NE0024	-	Cytochrome c, class I	
25	 51.74       31721..33127    	 -	468	30248056	-	NE0025	-	Metallo-beta-lactamase superfamily	
26	 52.10       33134..34444    	 -	436	30248057	bioA	NE0026	-	Aminotransferase class-III pyridoxal-phosphate	
27	 49.48       34605..34895    	 +	96	30248058	groES	NE0027	-	Chaperonins cpn10 (10 Kd subunit)	
28	 51.40       34935..36578    	 +	547	30248059	groEL	NE0028	-	TCP-1 (Tailless complex polypeptide)/cpn60 chaparonin family	
29	 51.30       36729..37457    	 +	242	30248060	-	NE0029	-	Short-chain dehydrogenase/reductase (SDR) superfamily	
30	 46.52       37794..39113    	 +	439	30248061	tig	NE0030	-	FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)	
31	 47.29       39097..39741    	 +	214	30248062	clpP	NE0031	-	Clp protease	
32	 45.67 -1    39802..41082    	 +	426	30248063	clpX	NE0032	-	clpX; ATP-dependent protease (ATP-binding specificity subunit)	
33	 46.12 -1    41193..43616    	 +	807	30248064	lon	NE0033	-	lon; ATP-dependent protease la protein	
34	 49.26       43971..45188    	 +	405	30248065	-	NE0034	-	Aminotransferase class-V	
35	 49.59       45481..47934    	 +	817	30248066	-	NE0035	-	putative ATP-dependent protease LA, putative	
36	 49.51       48009..49331    	 -	440	30248067	-	NE0036	-	Outer membrane efflux protein	
37	 50.08       49394..50050    	 -	218	30248068	pcm	NE0037	-	possible pcm; protein-L-isoaspartate o-methyltransferase	
38	 50.87       50259..52157    	 +	632	30248069	thiC	NE0038	-	ThiC family	
39	 48.18       52205..53026    	 +	273	30248070	bacA	NE0039	-	Bacitracin resistance protein BacA	
40	 51.88       53027..53479    	 -	150	30248071	-	NE0040	-	Rhodanese/cdc25 fold	
41	 45.33 -1    53561..54052    	 -	163	30248072	ppiB	NE0041	-	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	
42	 47.98       54071..54712    	 -	213	30248073	ppiA	NE0042	-	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	
43	 50.14       54841..56238    	 +	465	30248074	cysS	NE0043	-	Cysteinyl-tRNA synthetase	
44	 51.60       56251..57033    	 -	260	30248075	-	NE0044	-	hypothetical protein	
45	 49.24       57039..57962    	 -	307	30248076	motB	NE0045	-	Bacterial outer membrane protein	
46	 50.06       58002..58862    	 -	286	30248077	motA	NE0046	-	probable chemotaxis (motility protein A) transmembrane	
47	 60.14 +2    59059..59640    	 +	193	30248078	-	NE0047	-	Cytidine and deoxycytidylate deaminase zinc-binding region	
48	 53.87       59943..60731    	 +	262	30248079	-	NE0048	-	Class II Aldolase and Adducin N-terminal domain	
49	 51.87       60731..64420    	 +	1229	30248080	-	NE0049	-	Sensory transduction histidine kinases	
50	 52.18       64417..65610    	 +	397	30248081	sucC	NE0050	-	ATP-citrate lyase/succinyl-CoA ligases:ATP-grasp domain	
51	 51.03       65613..66488    	 +	291	30248082	sucD	NE0051	-	ATP-citrate lyase/succinyl-CoA ligases:DUF184	
52	 52.59       66507..66854    	 +	115	30248083	-	NE0052	-	hypothetical protein	
53	 47.55       66873..68300    	 +	475	30248084	-	NE0053	-	D-Ala-D-Ala carboxypeptidase 3 (S13) family	
54	 45.77 -1    74631..76334    	 +	567	30248085	-	NE0054	-	ABC transporter transmembrane region:ABC transporter	
55	 41.94 -2    76453..76998    	 +	181	30248086	ispZ	NE0055	-	hypothetical protein	
56	 50.35       77027..78160    	 +	377	30248087	mutY	NE0056	-	HhH-GPD	
57	 51.99       78153..78779    	 +	208	30248088	-	NE0057	-	5-formyltetrahydrofolate cyclo-ligase	
58	 50.79       78837..79472    	 -	211	30248089	-	NE0058	-	Flavoprotein	
59	 50.31       79491..80462    	 -	323	30248090	-	NE0059	-	HPr(Ser) kinase	
60	 50.11       80449..80919    	 -	156	30248091	ptsN	NE0060	-	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	
61	 38.69 -2    81151..81486    	 -	111	30248092	-	NE0061	-	Sigma 54 modulation protein / S30EA ribosomal protein	
62	 49.45       81662..83125    	 -	487	30248093	rpoN1	NE0062	-	Sigma-54 factor family	
63	 51.04       83132..83854    	 -	240	30248094	-	NE0063	-	ATPase component ABC-type (unclassified) transport system	
64	 46.60       83889..84506    	 -	205	30248095	-	NE0064	-	putative signal peptide protein	
65	 47.59       84563..85144    	 -	193	30248096	-	NE0065	-	conserved hypothetical protein	
66	 52.04       85429..86529    	 +	366	30248097	nadA	NE0066	-	Quinolinate synthetase A protein	
67	 50.30       86529..87353    	 +	274	30248098	-	NE0067	-	conserved hypothetical protein	
68	 53.28       87350..88507    	 +	385	30248099	-	NE0068	-	Phospholipase D/Transphosphatidylase	
69	 53.80       88660..90042    	 +	460	30248100	pcnB	NE0069	-	Poly A polymerase family	
70	 53.22       90039..90551    	 +	170	30248101	-	NE0070	-	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokina se	
71	 50.39       90548..91192    	 +	214	30248102	-	NE0071	-	Deoxynucleoside kinase	
72	 53.21       91193..92002    	 +	269	30248103	panB	NE0072	-	Ketopantoate hydroxymethyltransferase	
73	 52.76       92026..92859    	 +	277	30248104	panC	NE0073	-	Pantoate-beta-alanine ligase	
74	 51.68       92896..95451    	 -	851	30248105	-	NE0074	-	putative alpha-glucan phosphorylase, putative	
75	 48.35       95489..96034    	 -	181	30248106	-	NE0075	-	Exonuclease	
76	 49.81       96161..97465    	 +	434	30248107	-	NE0076	-	Peptidase family M48	
77	 46.20 -1    97462..97803    	 +	113	30248108	-	NE0077	-	Pterin 4 alpha carbinolamine dehydratase	
78	 51.43       97800..98744    	 +	314	30248109	-	NE0078	-	putative ATP-binding protein	
79	 51.30       98819..99280    	 -	153	30248110	fkpA	NE0079	-	FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)	
80	 46.84       99423..101147   	 -	574	30248111	-	NE0080	-	Diguanylate cyclase/phosphodiesterase domain 2 (EAL)	
81	 50.21      101247..101969   	 -	240	30248112	-	NE0081	-	possible transmembrane protein	
82	 52.06      102223..102756   	 +	177	30248113	-	NE0082	-	Proline-rich region	
83	 55.31 +1   102770..103315   	 +	181	30248114	-	NE0083	-	Proline-rich region	
84	 46.84      103482..103718   	 +	78	30248115	-	NE0084	-	Thioredoxin	
85	 51.19      103819..105078   	 -	419	30248116	-	NE0085	-	SAM (and some other nucleotide) binding motif:NOL1/NOP2/sun f...	
86	 49.31      105092..105817   	 -	241	30248117	-	NE0086	-	hypothetical protein	
87	 53.24      105814..106446   	 -	210	30248118	purN	NE0087	-	purN; phosphoribosylglycinamide formyltransferase protein	
88	 51.94      106458..107516   	 -	352	30248119	purM	NE0088	-	purM; phosphoribosylformylglycinamidine cyclo-ligase (airS) protein	
89	 49.86      107576..108634   	 +	352	30248120	-	NE0089	-	Domain of unknown function DUF20	
90	 52.27      108767..112162   	 -	1131	30248121	-	NE0090	-	Guanylate cyclase:TPR repeat:SAM domain (Sterile alpha motif)	
91	 55.11      112455..114539   	 -	694	30248122	-	NE0091	-	Universal stress protein (Usp):ABC1 family	
92	 55.56 +1   114744..115454   	 -	236	30248123	-	NE0092	-	conserved hypothetical protein	
93	 57.64 +1   115940..120313   	 -	1457	30248124	-	NE0093	-	recQ; ATP-dependent DNA helicase	
94	 53.01      121762..123321   	 -	519	30248125	guaA	NE0094	-	guaA; GMP synthetase	
95	 52.19      123333..124796   	 -	487	30248126	guaB	NE0095	-	guaB; inosine-5'-monophosphate dehydrogenase oxidoreductase protein	
96	 48.76      124910..125272   	 -	120	30248127	-	NE0096	-	hypothetical protein	
97	 47.60      125318..125983   	 -	221	30248128	-	NE0097	-	Haloacid dehalogenase/epoxide hydrolase family	
98	 47.06      126117..126779   	 -	220	30248129	-	NE0098	-	conserved hypothetical protein	
99	 40.20 -2   126918..128096   	 -	392	30248130	-	NE0099	-	hypothetical protein	
100	 54.27      128125..129399   	 -	424	30248131	-	NE0100	-	General substrate transporters	

 
 50.82 MEAN 
 
 4.40  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.