IslandPath Analysis: Mycoplasma mycoides



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 23.79   STD DEV: 3.70
Mycoplasma mycoides subsp. mycoides SC str. PG1, complete genome - 0..1211703
1016 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 23.33        1..1440     	 +	479	42560561	dnaA	MSC_0001	-	Chromosomal replication initiator protein DnaA	
2	 20.92        1602..2729     	 +	375	42560562	dnaN	MSC_0002	-	DNA POLYMERASE III, BETA CHAIN	
3	 18.91 -1     2766..3299     	 +	177	42560563	-	MSC_0003	-	Primase-related protein	
4	 20.72        3299..4099     	 +	266	42560564	ksgA	MSC_0004	-	Dimethyladenosine transferase KsgA	
5	 21.52        4156..5247     	 +	363	42560565	-	MSC_0005	-	Hypothetical purine NTPase	
6	 28.35 +1     5607..7511     	 +	634	42560566	gyrB	MSC_0006	-	DNA Gyrase Subunit B	
7	 26.87        7527..10031    	 +	834	42560567	gyrA	MSC_0007	-	DNA Gyrase Subunit A	
8	 29.75 +1    10082..11059    	 -	325	42560568	rbsC-2	MSC_0008	-	Ribose/Galactose ABC transporter, permease component II	
9	 22.31       11059..13626    	 -	855	42560569	rbsC-1	MSC_0009	-	Ribose/Galactose ABC transporter, permease component I	
10	 27.09       13616..15232    	 -	538	42560570	rbsA	MSC_0010	-	Ribose/Galactose ABC transporter, ATP-binding component	
11	 27.83 +1    15235..16887    	 -	550	42560571	rbsB	MSC_0011	-	Ribose/galactose ABC transporter, substrate-binding component	
12	 23.20       17078..18607    	 -	509	42560572	metS	MSC_0012	-	Methionine-tRNA ligase	
13	 23.56       18811..20457    	 +	548	42560573	lpp	MSC_0013	-	Prolipoprotein	
14	 25.27       20490..22088    	 +	532	42560574	p72	MSC_0014	-	IMMUNODOMINANT PROTEIN P72 PRECURSOR	
15	 24.74       22141..23001    	 -	286	42560575	tnpB IS1296sq	MSC_0015	-	transposase IS1296SQ (ORFB)	
16	 23.94       23010..23552    	 -	180	42560576	tnpA IS1296sq	MSC_0016	-	Transposase IS1296SQ (ORFA)	
17	 19.15 -1    23628..24614    	 -	328	42560577	mtlD	MSC_0017	-	MANNITOL-1-PHOSPHATE 5-DEHYDROGENASE	
18	 19.55 -1    24615..25412    	 -	265	42560578	-	MSC_0018	-	Transcriptional regulator, RpiR family	
19	 21.68       25446..25874    	 -	142	42560579	EIIA-mtl	MSC_0019	-	PTS SYSTEM, MANNITOL-PERMEASE IIA COMPONENT	
20	 25.82       25874..26632    	 -	252	42560580	srlD	MSC_0020	-	SORBITOL-6-PHOSPHATE 2-DEHYDROGENASE	
21	 27.32       26632..28194    	 -	520	42560581	EIIBC-mtl	MSC_0021	-	PTS SYSTEM, MANNITOL-PERMEASE IIBC COMPONENT	
22	 22.99       28445..28705    	 -	86	42560582	-	MSC_0022	-	hypothetical protein	
23	 25.82       28675..29286    	 -	203	42560583	recG	MSC_0023	-	probable DNA recombinase recG	
24	 26.83       29333..29824    	 -	163	42560584	-	MSC_0024	-	Conserved hypothetical protein	
25	 25.00       30178..30405    	 -	75	42560585	rpsR	MSC_0025	-	30S ribosomal protein S18	
26	 28.12 +1    30425..30865    	 -	146	42560586	ssb	MSC_0026	-	Single-strand binding protein	
27	 24.64       30877..31290    	 -	137	42560587	rpsF	MSC_0027	-	30S ribosomal protein S6	
28	 23.81       31496..31705    	 -	69	42560588	csp	MSC_0028	-	COLD SHOCK PROTEIN	
29	 27.17       31891..32490    	 +	199	42560589	acpD	MSC_0029	-	Acyl carrier protein phosphodiesterase	
30	 27.44       32527..33561    	 -	344	42560590	abc	MSC_0030	-	ABC TRANSPORTER, ATP-BINDING PROTEIN (Antibiotic?)	
31	 21.12       33609..34484    	 -	291	42560591	hsp33	MSC_0031	-	HEAT SHOCK PROTEIN (33 kDa chaperonin)	
32	 21.60       34684..37836    	 -	1050	42560592	-	MSC_0032	-	Conserved hypothetical transmembrane protein	
33	 23.39       37983..43370    	 +	1795	42560593	-	MSC_0033	-	Predicted permease	
34	 27.05       43808..44794    	 +	328	42560594	ldh	MSC_0034	-	D-LACTATE DEHYDROGENASE	
35	 28.09 +1    44813..45937    	 +	374	42560595	-	MSC_0035	-	MALATE PERMEASE	
36	 29.34 +1    46289..47215    	 +	308	42560596	-	MSC_0036	-	Conserved hypothetical protein	
37	 25.14       47223..47576    	 +	117	42560597	-	MSC_0037	-	Conserved hypothetical protein	
38	 26.22       47780..49453    	 +	557	42560598	tnp IS1634bt	MSC_0038	-	Transposase IS1634BT	
39	 30.56 +1    49583..51529    	 -	648	42560599	ftsH	MSC_0039	-	ATP-dependent zinc metallopeptidase FtsH	
40	 20.57       51761..52144    	 +	127	42560600	-	MSC_0040	-	Hypothetical protein	
41	 22.22       52237..52605    	 +	122	42560601	-	MSC_0041	-	Hypothetical protein	
42	 18.24 -1    52589..53794    	 -	401	42560602	-	MSC_0042	-	Conserved hypothetical protein	
43	 25.24       53797..54624    	 -	275	42560603	-	MSC_0043	-	Conserved hypothetical protein	
44	 21.44       54676..55398    	 -	240	42560604	-	MSC_0044	-	Methyltransferase	
45	 19.16 -1    55398..56138    	 -	246	42560605	holB	MSC_0045	-	DNA polymerase III delta subunit	
46	 25.08       56116..56757    	 -	213	42560606	tmk	MSC_0046	-	THYMIDYLATE KINASE	
47	 20.05 -1    56990..57358    	 -	122	42560607	recR	MSC_0047	-	DNA REPAIR PROTEIN RecR	
48	 21.54       57351..59309    	 -	652	42560608	dnaX	MSC_0048	-	DNA polymerase III gamma-tau subunits	
49	 20.51       59379..59846    	 -	155	42560609	codA	MSC_0049	-	CYTOSINE DEAMINASE	
50	 27.93 +1    59963..60925    	 -	320	42560610	guaC	MSC_0050	-	GMP reductase	
51	 19.31 -1    61276..61824    	 -	182	42560611	-	MSC_0051	-	Hypothetical transmembrane protein	
52	 22.69       62352..64427    	 -	691	42560612	-	MSC_0052	-	Conserved HYPOTHETICAL PROTEIN	
53	 24.00       64605..65054    	 -	149	42560613	-	MSC_0053	-	AhpC/TSA family protein	
54	 25.13       65125..66867    	 +	580	42560614	ptsG	MSC_0054	-	PTS system, glucose-specific IIABC component	
55	 24.74       66921..67781    	 -	286	42560615	tnpB IS1296ie	MSC_0055	-	transposase IS1296IE (ORFB)	
56	 24.68       67790..68344    	 -	184	42560616	tnpA IS1296ie	MSC_0056	-	Transposase IS1296IE (ORFA)	
57	 22.95       68400..68582    	 -	60	42560617	-	MSC_0057	-	hypothetical protein	
58	 22.09       68766..69014    	 -	82	42560618	-	MSC_0058	-	Hypothetical protein	
59	 20.00 -1    68941..69090    	 -	49	42560619	-	MSC_0059	-	Hypothetical protein	
60	 26.16       69594..71267    	 +	557	42560620	tnp IS1634bk	MSC_0060	-	Transposase IS1634BK	
61	 22.07       71462..72136    	 -	224	42560621	lpp	MSC_0061	-	Prolipoprotein	
62	 22.00       72310..72609    	 +	99	42560622	-	MSC_0062	-	Hypothetical transmembrane protein	
63	 21.65       72628..73209    	 +	193	42560623	-	MSC_0063	-	Hypothetical transmembrane protein	
64	 29.09 +1    73306..74436    	 +	376	42560624	ald	MSC_0064	-	alanine dehydrogenase	
65	 24.97       74837..75661    	 +	274	42560625	-	MSC_0065	-	Hypothetical transmembrane protein	
66	 25.61       75743..77011    	 +	422	42560626	serS	MSC_0066	-	Serine-tRNA ligase	
67	 26.03       77113..77427    	 +	104	42560627	-	MSC_0067	-	Hypothetical protein	
68	 28.51 +1    77429..78403    	 +	324	42560628	-	MSC_0068	-	Transcriptional regulator (involved in nitrogen regulation; NifR3 family	
69	 27.35       78406..79908    	 +	500	42560629	lysS	MSC_0069	-	Lysine-tRNA ligase	
70	 26.51       80179..81702    	 -	507	42560630	tnp is1634ba	MSC_0070	-	Transposase IS1634BA	
71	 28.80 +1    82309..82617    	 -	102	42560631	trxA	MSC_0072	-	THIOREDOXIN	
72	 25.39       82628..83470    	 -	280	42560632	-	MSC_0073	-	Putative hydrolase of the HAD family	
73	 26.11       88758..90431    	 +	557	42560633	tnp IS1634bv	MSC_0074	-	Transposase IS1634BV	
74	 15.01 -2    91074..92372    	 +	432	42560634	-	MSC_0075	-	Hypothetical transmembrane protein	
75	 20.44       92413..93141    	 +	242	42560635	comEC	MSC_0076	-	competence protein ComEC	
76	 22.66       93174..95909    	 -	911	42560636	phnE	MSC_0077	-	phosphonate ABC transporter, permease component	
77	 26.96       95913..96665    	 -	250	42560637	phnC	MSC_0078	-	phosphonate ABC transporter, ATP-binding component	
78	 27.46       96679..98022    	 -	447	42560638	phnD?	MSC_0079	-	prolipoprotein, putative phosphonate ABC transport	
79	 28.18 +1    98313..99671    	 -	452	42560639	asnS	MSC_0080	-	asparagine-tRNA ligase	
80	 24.88       99680..100519   	 -	279	42560640	-	MSC_0081	-	putative hydrolase of the HAD family	
81	 20.16      100530..101660   	 -	376	42560641	-	MSC_0082	-	Putative hydrolase from alpha/beta family	
82	 26.25      101683..102642   	 -	319	42560642	gcp	MSC_0083	-	O-SIALOGLYCOPROTEIN ENDOPEPTIDASE	
83	 32.44 +2   102736..102960   	 -	74	42560643	-	MSC_0084	-	Conserved HYPOTHETICAL PROTEIN	
84	 23.62      103160..104518   	 +	452	42560644	trmE	MSC_0085	-	tRNA modification GTPase, TrmE	
85	 25.00      104566..104865   	 -	99	42560645	rpsT	MSC_0086	-	30S ribosomal protein S20	
86	 20.32      105138..105890   	 -	250	42560646	-	MSC_0087	-	Hypothetical transmembrane protein	
87	 22.82      105976..106593   	 -	205	42560647	-	MSC_0088	-	Hypothetical transmembrane protein	
88	 27.02      106684..109518   	 -	944	42560648	secA	MSC_0089	-	preprotein translocase SecA subunit	
89	 17.71 -1   109609..110184   	 +	191	42560649	pepQ	MSC_0090	-	Proline dipeptidase	
90	 21.75      110260..111174   	 +	304	42560650	polA	MSC_0091	-	DNA POLYMERASE I, 5'-3' exonuclease	
91	 21.44      111334..111888   	 +	184	42560651	-	MSC_0092	-	Hypothetical protein	
92	 22.71      112407..113027   	 +	206	42560652	-	MSC_0093	-	Conserved HYPOTHETICAL PROTEIN	
93	 21.86      113162..113719   	 +	185	42560653	-	MSC_0094	-	Conserved HYPOTHETICAL PROTEIN	
94	 23.91      114283..114558   	 +	91	42560654	-	MSC_0095	-	hypothetical protein	
95	 18.95 -1   114548..115117   	 +	189	42560655	coaE	MSC_0096	-	DEPHOSPHO-COA KINASE	
96	 25.99      115276..116949   	 +	557	42560656	tnp IS1634bo	MSC_0097	-	Transposase IS1634BO	
97	 25.99      117662..119335   	 -	557	42560657	tnp IS1634ap	MSC_0098	-	Transposase IS1634AP	
98	 23.56      119428..119877   	 -	149	42560658	hlyA	MSC_0099	-	hemolysin A	
99	 24.07      119877..120092   	 -	71	42560659	xseB	MSC_0100	-	Exodeoxyribonuclease VII small subunit	
100	 23.90      120082..121491   	 -	469	42560660	xseA	MSC_0101	-	exodeoxyribonuclease VII large subunit	

 
 23.79 MEAN 
 
 3.70  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.