IslandPath Analysis: Mycobacterium avium paratuberculosis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.39   STD DEV: 3.47
Mycobacterium avium subsp. paratuberculosis str. k10, complete genome - 0..4829781
4350 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 66.54        1..1530     	 +	509	41406099	dnaA	MAP0001	-	DnaA	
2	 68.92        2100..3299     	 +	399	41406100	dnaN	MAP0002	-	DnaN	
3	 70.90        3300..4457     	 +	385	41406101	recF	MAP0003	-	RecF	
4	 75.25 +1     4499..4999     	 +	166	41406102	-	MAP0004	-	hypothetical protein	
5	 64.01 -1     5258..7291     	 +	677	41406103	gyrB	MAP0005	-	GyrB	
6	 67.98        7303..9822     	 +	839	41406104	gyrA	MAP0006	-	GyrA	
7	 72.89 +1     9925..10776    	 +	283	41406105	-	MAP0007	-	hypothetical protein	
8	 72.54       11146..11724    	 -	192	41406106	-	MAP0008c	-	hypothetical protein	
9	 68.63       11810..13135    	 +	441	41406107	-	MAP0009	-	hypothetical protein	
10	 76.55 +2    13137..13571    	 -	144	41406108	-	MAP0010c	-	hypothetical protein	
11	 67.40       13662..14210    	 +	182	41406109	ppiA	MAP0011	-	PpiA	
12	 68.31       14222..14647    	 -	141	41406110	-	MAP0012c	-	hypothetical protein	
13	 60.99 -2    14804..15085    	 -	93	41406111	-	MAP0013c	-	hypothetical protein	
14	 72.18       15216..15959    	 +	247	41406112	-	MAP0014	-	hypothetical protein	
15	 69.00       16008..16694    	 +	228	41406113	pabA	MAP0015	-	PabA	
16	 68.42       16672..18552    	 -	626	41406114	pknB	MAP0016c	-	PknB	
17	 78.63 +2    18549..19058    	 -	169	41406115	-	MAP0017c	-	hypothetical protein	
18	 68.77       19070..19831    	 -	253	41406116	pknA	MAP0018c	-	PknA	
19	 69.84       19828..21306    	 -	492	41406117	pbpA	MAP0019c	-	PbpA	
20	 64.61 -1    21303..22712    	 -	469	41406118	rodA	MAP0020c	-	RodA	
21	 71.60       22709..24208    	 -	499	41406119	ppp	MAP0021c	-	Ppp	
22	 65.81 -1    24273..24740    	 -	155	41406120	-	MAP0022c	-	hypothetical protein	
23	 70.95       24865..26499    	 -	544	41406121	-	MAP0023c	-	hypothetical protein	
24	 67.87       26932..27597    	 -	221	41406122	-	MAP0024c	-	hypothetical protein	
25	 61.36 -2    27648..27911    	 +	87	41406123	-	MAP0025	-	hypothetical protein	
26	 69.30       27908..29464    	 +	518	41406124	fadD33_1	MAP0026	-	FadD33_1	
27	 65.67 -1    29619..31517    	 +	632	41406125	-	MAP0027	-	hypothetical protein	
28	 63.92 -1    32641..33876    	 -	411	41406126	-	MAP0028c	-	hypothetical protein	
29	 70.52       35295..36539    	 -	414	41406127	-	MAP0029c	-	hypothetical protein	
30	 61.21 -2    36594..36923    	 -	109	41406128	-	MAP0030c	-	hypothetical protein	
31	 68.48       36910..37902    	 -	330	41406129	-	MAP0031c	-	hypothetical protein	
32	 67.39       37908..39290    	 -	460	41406130	fadE25_1	MAP0032c	-	FadE25_1	
33	 72.90 +1    39384..39800    	 -	138	41406131	-	MAP0033c	-	hypothetical protein	
34	 67.16       40022..41242    	 +	406	41406132	-	MAP0034	-	hypothetical protein	
35	 68.19       41395..42183    	 +	262	41406133	-	MAP0035	-	hypothetical protein	
36	 72.24       42180..43004    	 +	274	41406134	-	MAP0036	-	hypothetical protein	
37	 68.32       43053..43415    	 +	120	41406135	-	MAP0037	-	hypothetical protein	
38	 70.45       43531..44982    	 +	483	41406136	-	MAP0038	-	hypothetical protein	
39	 65.09 -1    45033..45350    	 +	105	41406137	-	MAP0039	-	hypothetical protein	
40	 65.38 -1    45347..45658    	 +	103	41406138	-	MAP0040	-	hypothetical protein	
41	 72.54       45918..47552    	 +	544	41406139	-	MAP0041	-	hypothetical protein	
42	 67.28       47604..47927    	 +	107	41406140	-	MAP0042	-	hypothetical protein	
43	 75.06 +1    47969..48742    	 -	257	41406141	-	MAP0043c	-	hypothetical protein	
44	 71.02       48800..50086    	 -	428	41406142	-	MAP0044c	-	hypothetical protein	
45	 69.64       50217..50822    	 +	201	41406143	-	MAP0045	-	hypothetical protein	
46	 75.73 +1    50838..51179    	 -	113	41406144	-	MAP0046c	-	hypothetical protein	
47	 72.22       51235..52458    	 -	407	41406145	-	MAP0047c	-	hypothetical protein	
48	 68.73       52505..55414    	 +	969	41406146	leuS	MAP0048	-	LeuS	
49	 69.05       55421..56092    	 -	223	41406147	-	MAP0049c	-	hypothetical protein	
50	 68.85       56151..56699    	 -	182	41406148	-	MAP0050c	-	hypothetical protein	
51	 65.60 -1    56721..57467    	 -	248	41406149	gluA	MAP0051c	-	GluA	
52	 68.91       57464..59203    	 -	579	41406150	glnQ	MAP0052c	-	GlnQ	
53	 68.29       59323..60063    	 -	246	41406151	-	MAP0053c	-	hypothetical protein	
54	 68.82       60182..60970    	 -	262	41406152	-	MAP0054c	-	hypothetical protein	
55	 69.84       60978..61892    	 -	304	41406153	-	MAP0055c	-	hypothetical protein	
56	 68.53       61916..63151    	 -	411	41406154	-	MAP0056c	-	hypothetical protein	
57	 71.14       63154..63957    	 -	267	41406155	-	MAP0057c	-	hypothetical protein	
58	 67.54       63959..65101    	 -	380	41406156	-	MAP0058c	-	hypothetical protein	
59	 69.68       65125..66252    	 -	375	41406157	-	MAP0059c	-	hypothetical protein	
60	 65.94       66384..67490    	 -	368	41406158	-	MAP0060c	-	hypothetical protein	
61	 67.03       67550..68092    	 -	180	41406159	-	MAP0061c	-	hypothetical protein	
62	 70.40       68239..69123    	 -	294	41406160	-	MAP0062c	-	hypothetical protein	
63	 69.06       69266..69682    	 +	138	41406161	-	MAP0063	-	hypothetical protein	
64	 70.24       69679..72312    	 +	877	41406162	ponA_1	MAP0064	-	PonA_1	
65	 68.86       72309..73946    	 +	545	41406163	-	MAP0065	-	hypothetical protein	
66	 70.25       73943..74584    	 +	213	41406164	-	MAP0066	-	hypothetical protein	
67	 62.89 -1    74719..75009    	 +	96	41406165	rpsF	MAP0067	-	RpsF	
68	 71.01       75127..75633    	 +	168	41406166	ssb	MAP0068	-	Ssb	
69	 62.75 -1    75675..75929    	 +	84	41406167	rpsR	MAP0069	-	RpsR	
70	 69.06       75960..76418    	 +	152	41406168	rplI	MAP0070	-	RplI	
71	 65.49 -1    76950..79577    	 +	875	41406169	dnaB	MAP0071	-	DnaB	
72	 60.92 -2    79717..80604    	 -	295	41406170	-	MAP0072c	-	hypothetical protein	
73	 67.04       80690..81499    	 -	269	41406171	-	MAP0073c	-	hypothetical protein	
74	 69.30       81582..82151    	 +	189	41406172	-	MAP0074	-	hypothetical protein	
75	 66.19       83657..84079    	 +	140	41406173	-	MAP0075	-	hypothetical protein	
76	 65.20 -1    84088..87009    	 +	973	41406174	mmpL4_1	MAP0076	-	MmpL4_1	
77	 68.11       87226..88332    	 +	368	41406175	-	MAP0077	-	hypothetical protein	
78	 72.83       88415..88690    	 +	91	41406176	-	MAP0078	-	hypothetical protein	
79	 68.02       88710..89450    	 +	246	41406177	-	MAP0079	-	hypothetical protein	
80	 67.30       89479..90114    	 -	211	41406178	-	MAP0080c	-	hypothetical protein	
81	 69.63       90461..91777    	 +	438	41406179	-	MAP0081	-	hypothetical protein	
82	 66.37       92165..92842    	 +	225	41406180	-	MAP0082	-	hypothetical protein	
83	 67.57       92839..93282    	 -	147	41406181	-	MAP0083c	-	hypothetical protein	
84	 67.01       93303..94178    	 -	291	41406182	-	MAP0084c	-	hypothetical protein	
85	 70.58       94329..95171    	 -	280	41406183	LysR	MAP0085c	-	LysR	
86	 69.88       95335..96267    	 +	310	41406184	-	MAP0086	-	hypothetical protein	
87	 65.55 -1    96357..97073    	 +	238	41406185	-	MAP0087	-	hypothetical protein	
88	 60.50 -2    97261..97698    	 +	145	41406186	-	MAP0088	-	hypothetical protein	
89	 64.77 -1    97733..98311    	 +	192	41406187	-	MAP0089	-	hypothetical protein	
90	 66.98       98324..98962    	 -	212	41406188	-	MAP0090c	-	hypothetical protein	
91	 62.72 -1    99010..99693    	 -	227	41406189	-	MAP0091c	-	hypothetical protein	
92	 66.21       99947..100816   	 +	289	41406190	-	MAP0092	-	hypothetical protein	
93	 65.53 -1   100818..101345   	 +	175	41406191	-	MAP0093	-	hypothetical protein	
94	 66.32      101555..101839   	 +	94	41406192	-	MAP0094	-	hypothetical protein	
95	 64.58 -1   102968..103495   	 -	175	41406193	nuoI_1	MAP0095c	-	NuoI_1	
96	 61.26 -2   103696..104028   	 -	110	41406194	-	MAP0096c	-	hypothetical protein	
97	 63.44 -1   104057..104644   	 -	195	41406195	-	MAP0097c	-	hypothetical protein	
98	 66.67      104739..105512   	 -	257	41406196	-	MAP0098c	-	hypothetical protein	
99	 62.07 -2   106041..106214   	 +	57	41406197	-	MAP0099	-	hypothetical protein	
100	 61.04 -2   107007..107504   	 +	165	41406198	-	MAP0100	-	hypothetical protein	

 
 69.39 MEAN 
 
 3.47  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.