IslandPath Analysis: Methanococcus maripaludis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.73   STD DEV: 3.61
Methanococcus maripaludis S2, complete genome - 0..1661137
1722 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 35.46    10104..10385    	 +	93	45357564	-	MMP0001	-	conserved archaeal protein	
2	 33.33       10416..11480    	 +	354	45357565	-	MMP0002	-	L-seryl-tRNA selenium transferase related protein	
3	 39.01 +1    11517..12608    	 -	363	45357566	korA	MMP0003	-	2-oxoglutarate oxidoreductase alpha subunit	
4	 34.34       12647..13543    	 -	298	45357567	-	MMP0004	-	Kinase related protein	
5	 29.10 -1    13625..15208    	 -	527	45357568	-	MMP0005	-	hypothetical protein	
6	 35.08       15336..16421    	 +	361	45357569	-	MMP0006	-	Conserved hypothetical protein	
7	 38.65 +1    16803..17573    	 +	256	45357570	-	MMP0007	-	Conserved hypothetical protein	
8	 34.47       17602..19359    	 -	585	45357571	DP1	MMP0008	-	DNA polymerase, archaeal type II, small subunit	
9	 32.62       19370..20488    	 -	372	45357572	-	MMP0009	-	putative DNA primase large subunit	
10	 32.86       20506..20931    	 -	141	45357573	-	MMP0010	-	Conserved hypothetical Archael protein	
11	 32.96       20974..22041    	 -	355	45357574	-	MMP0011	-	C-5 cytosine-specific DNA methylase	
12	 28.22 -1    22111..22560    	 +	149	45357575	-	MMP0012	-	Conserved hypothetical protein	
13	 35.13       22602..24047    	 +	481	45357576	argH	MMP0013	-	argininosuccinate lyase	
14	 28.55 -1    24061..25230    	 -	389	45357577	-	MMP0014	-	conserved hypothetical protein	
15	 30.22       25243..26046    	 -	267	45357578	-	MMP0015	-	conserved hypothetical protein	
16	 31.91       26061..26552    	 -	163	45357579	-	MMP0016	-	Conserved hypothetical protein	
17	 32.48       26673..27725    	 -	350	45357580	-	MMP0017	-	conserved hypothetical protein	
18	 32.74       27798..28640    	 +	280	45357581	-	MMP0018	-	Transcriptional regulator, LysR Family Member	
19	 32.02       28670..28897    	 -	75	45357582	-	MMP0019	-	hypothetical protein	
20	 38.73 +1    28989..29414    	 -	141	45357583	-	MMP0020	-	conserved hypothetical protein	
21	 30.94       29531..30406    	 +	291	45357584	-	MMP0021	-	conserved hypothetical archaeal protein	
22	 25.30 -2    30411..30746    	 -	111	45357585	-	MMP0022	-	Conserved hypothetical protein	
23	 35.88       30743..31567    	 -	274	45357586	-	MMP0023	-	conserved hypothetical protein	
24	 34.86       31747..32862    	 +	371	45357587	-	MMP0024	-	putative AAA superfamily ATPase, similar to FtsH	
25	 31.50       32916..33188    	 -	90	45357588	-	MMP0025	-	hypothetical protein	
26	 36.60       33256..36651    	 -	1131	45357589	DP2	MMP0026	-	DNA-directed DNA polymerase II large subunit	
27	 33.83       42181..43188    	 -	335	45357590	-	MMP0027	-	putative potassium channel protein	
28	 27.62 -1    43261..44712    	 +	483	45357591	-	MMP0028	-	cobyric acid synthase related protein	
29	 29.89 -1    44777..45415    	 -	212	45357592	-	MMP0029	-	conserved hypothetical archeal protein	
30	 32.54       45639..47657    	 +	672	45357593	-	MMP0030	-	DNA replication protein; MCM family; putative	
31	 24.47 -2    47673..48755    	 +	360	45357594	-	MMP0031	-	conserved hypothetical archeal protein	
32	 26.25 -2    49388..49909    	 -	173	45357595	-	MMP0032	-	ArsR family member	
33	 33.01       50520..51746    	 +	408	45357596	-	MMP0033	-	LysR family member	
34	 34.92       51767..52714    	 +	315	45357597	-	MMP0034	-	conserved hypothetical protein	
35	 30.57       52740..53789    	 +	349	45357598	-	MMP0035	-	conserved hypothetical protein	
36	 31.54       53793..54350    	 +	185	45357599	tfe	MMP0036	-	Transcription factor E	
37	 26.70 -1    54361..54948    	 +	195	45357600	-	MMP0037	-	hypothetical protein; HD domain	
38	 32.78       54975..55871    	 -	298	45357601	-	MMP0038	-	conserved hypothetical protein	
39	 32.39       55876..56934    	 -	352	45357602	-	MMP0039	-	conserved hypothetical protein	
40	 35.39       56946..58595    	 -	549	45357603	-	MMP0040	-	type II secretion system protein; putative; subunit 1	
41	 37.94 +1    58605..59624    	 -	339	45357604	tfb	MMP0041	-	transcription initiation factor B	
42	 31.56       59643..59924    	 -	93	45357605	-	MMP0042	-	conserved hypothetical protein	
43	 36.14       60428..61495    	 +	355	45357606	-	MMP0043	-	isopentenyl-diphosphate delta-isomerase related protein	
44	 37.27       61568..62914    	 +	448	45357607	-	MMP0044	-	conserved hypothetical protein	
45	 33.65       62928..63881    	 +	317	45357608	idsA	MMP0045	-	bifunctional short chain isoprenyl diphosphate synthase	
46	 32.23       63932..64384    	 +	150	45357609	-	MMP0046	-	conserved hypothetical protein	
47	 32.79       64389..65498    	 -	369	45357610	-	MMP0047	-	conserved hypothetical protein	
48	 32.60       65556..65828    	 +	90	45357611	-	MMP0048	-	conserved hypothetical protein	
49	 35.09       65867..66322    	 +	151	45357612	-	MMP0049	-	carbonic anhydrase (gamma family Zn(II)-dependent enzymes)	
50	 36.71       66371..66784    	 +	137	45357613	-	MMP0050	-	riboflavin synthase, beta subunit (6,7-dimethyl-8-ribityllumazine synthase)	
51	 32.65       66822..67112    	 +	96	45357614	hisE	MMP0051	-	Phosphoribosyl-ATP pyrophosphatase	
52	 33.44       67114..68025    	 -	303	45357615	-	MMP0052	-	Conserved Hypothetical protein with 2 CBS domains	
53	 31.58       68156..68896    	 -	246	45357616	-	MMP0053	-	Protein of unknown function DUF34	
54	 31.36       68893..69501    	 -	202	45357617	-	MMP0054	-	conserved hypothetical protein	
55	 35.00       69515..69994    	 -	159	45357618	-	MMP0055	-	Conserved hypothetical Archael protein	
56	 34.91       70102..71181    	 -	359	45357619	cofH	MMP0056	-	FO synthase, subunit CofH	
57	 34.08       71296..72372    	 -	358	45357620	cofH	MMP0057	-	FO synthase, subunit CofH	
58	 40.29 +1    72602..73564    	 +	320	45357621	mer	MMP0058	-	coenzyme F420-dependent N5,N10-methylenetetrahydromethanopterin reductase	
59	 28.84 -1    73629..74051    	 -	140	45357622	-	MMP0059	-	conserved hypothetical archaeal protein	
60	 29.00 -1    74160..74390    	 -	76	45357623	-	MMP0060	-	Ribosomal LX protein	
61	 36.70       74409..75092    	 -	227	45357624	aIF6	MMP0061	-	Translation initiation factor IF6	
62	 32.94       75129..75380    	 -	83	45357625	-	MMP0062	-	Ribosomal protein L31e	
63	 38.53 +1    75475..76359    	 +	294	45357626	argB	MMP0063	-	Acetylglutamate kinase	
64	 34.81       76751..77089    	 +	112	45357627	glnK1	MMP0064	-	Nitrogen regulatory protein P-II	
65	 41.56 +2    77116..78342    	 +	408	45357628	amtB	MMP0065	-	Ammonia transporter	
66	 33.04       78446..78784    	 +	112	45357629	glnB	MMP0066	-	Nitrogen regulatory protein P-II	
67	 38.64 +1    78986..79324    	 +	112	45357630	glnK2	MMP0067	-	Nitrogen regulatory protein P-II	
68	 40.37 +1    79353..80588    	 +	411	45357631	amtB	MMP0068	-	Ammonia transporter	
69	 37.00       80649..80948    	 +	99	45357632	-	MMP0069	-	methyltransferase	
70	 31.20       81202..82140    	 +	312	45357633	-	MMP0070	-	tungsten containing formylmethanofruran dehydrogenase subunit C-related protein	
71	 32.59       82661..83734    	 -	357	45357634	-	MMP0071	-	DNA primase, small subunit	
72	 34.05       83849..84829    	 +	326	45357635	-	MMP0072	-	conserved archaeal protein	
73	 37.02       84962..86155    	 +	397	45357636	argG	MMP0073	-	Argininosuccinate synthase	
74	 33.89       86225..86581    	 +	118	45357637	-	MMP0074	-	Conserved hypothetical Archael protein	
75	 29.31 -1    86570..87538    	 -	322	45357638	-	MMP0075	-	conserved hypothetical protein	
76	 38.57 +1    87608..87817    	 -	69	45357639	-	MMP0076	-	conserved hypothetical protein	
77	 34.29       87961..88689    	 +	242	45357640	-	MMP0077	-	conserved hypothetical protein	
78	 32.98       88705..89550    	 -	281	45357641	-	MMP0078	-	conserved hypothetical protein	
79	 33.66       89745..90362    	 +	205	45357642	-	MMP0079	-	Orotate phosphoribosyltransferase related protein	
80	 38.19 +1    90509..91600    	 +	363	45357643	-	MMP0080	-	glutamate synthase; large subunit; archaeal subunit 1	
81	 39.92 +1    91628..93160    	 +	510	45357644	gltB	MMP0081	-	glutamate synthase; large subunit; archaeal subunit 2	
82	 38.64 +1    93160..93951    	 +	263	45357645	-	MMP0082	-	glutamate synthase; large subunit; archaeal subunit 3	
83	 34.72       93984..95063    	 +	359	45357646	-	MMP0083	-	conserved archaeal protein	
84	 29.83 -1    95381..96094    	 -	237	45357647	-	MMP0084	-	conserved hypothetical protein	
85	 32.76       96131..97177    	 -	348	45357648	-	MMP0085	-	conserved hypothetical protein	
86	 35.27       97177..97641    	 -	154	45357649	-	MMP0086	-	LuxR family member	
87	 38.47 +1    97761..98987    	 -	408	45357650	hmgA	MMP0087	-	Hydroxymethylglutaryl-coenzyme A reductase:3-hydroxy-3-methylglutaryl Coenzyme A reductase	
88	 32.03       98977..100125   	 -	382	45357651	gtrA	MMP0088	-	Glutamyl-tRNA reductase	
89	 26.90 -1   100130..100735   	 -	201	45357652	-	MMP0089	-	Conserved hypothetical protein	
90	 28.28 -1   100750..101817   	 -	355	45357653	-	MMP0090	-	Glycosyl transferase	
91	 34.70      101838..102422   	 -	194	45357654	-	MMP0091	-	conserved hypothetical archaeal protein	
92	 30.86      102523..102846   	 -	107	45357655	rpoF	MMP0092	-	DNA-directed RNA polymerase subunit F	
93	 37.07      102895..103188   	 -	97	45357656	-	MMP0093	-	Ribosomal protein L21e	
94	 35.31      103274..104686   	 -	470	45357657	-	MMP0094	-	Conserved hypothetical protein	
95	 35.78      104708..105892   	 +	394	45357658	-	MMP0095	-	Conserved Hypothetical protein, PHP domain C-terminal region	
96	 34.09      105895..107082   	 -	395	45357659	-	MMP0096	-	Aminotransferase (subgroup I)	
97	 32.24      107207..107755   	 +	182	45357660	-	MMP0097	-	Transcriptional regulator protein, Helix-turn-helix motif	
98	 41.92 +2   107786..107983   	 -	65	45357661	-	MMP0098	-	ferredoxin	
99	 34.64      108126..109277   	 +	383	45357662	-	MMP0099	-	General substrate transporter	
100	 36.47      109297..110475   	 -	392	45357663	-	MMP0100	-	Na+/H+ exchanger family	

 
 33.73 MEAN 
 
 3.61  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.