IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.91   STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 0..2905310
2821 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 37.54      319..1674     	 +	451	46906225	dnaA	LMOf2365_0001	-	chromosomal replication initiator protein DnaA	
2	 34.29 -1     1868..3013     	 +	381	46906226	dnaN	LMOf2365_0002	-	DNA polymerase III, beta subunit	
3	 39.43        3121..4464     	 +	447	46906227	-	LMOf2365_0003	-	MATE efflux family protein	
4	 40.54        4644..4865     	 +	73	46906228	-	LMOf2365_0004	-	conserved hypothetical protein	
5	 39.17        4869..5981     	 +	370	46906229	recF	LMOf2365_0005	-	DNA replication and repair protein RecF	
6	 40.29        6030..7970     	 +	646	46906230	gyrB	LMOf2365_0006	-	DNA gyrase, B subunit	
7	 40.17        8065..10593    	 +	842	46906231	gyrA	LMOf2365_0007	-	DNA gyrase, A subunit	
8	 37.49       10727..12241    	 +	504	46906232	cls-1	LMOf2365_0008	-	cardiolipin synthetase	
9	 33.53 -1    12257..12775    	 +	172	46906233	speG	LMOf2365_0009	-	spermidine N1-acetyltransferase	
10	 31.62 -1    12779..12895    	 +	38	46906234	-	LMOf2365_0010	-	hypothetical protein	
11	 38.39       12917..13885    	 +	322	46906235	-	LMOf2365_0011	-	mevalonate kinase	
12	 40.74       13842..14813    	 +	323	46906236	mvaD	LMOf2365_0012	-	diphosphomevalonate decarboxylase	
13	 39.31       14803..15873    	 +	356	46906237	-	LMOf2365_0013	-	phosphomevalonate kinase	
14	 27.69 -2    15966..16160    	 -	64	46906238	-	LMOf2365_0014	-	hypothetical protein	
15	 38.21       18301..19407    	 +	368	46906239	qoxA	LMOf2365_0016	-	quinol oxidase AA3, subunit II	
16	 40.61       19426..21405    	 +	659	46906240	qoxB	LMOf2365_0017	-	quinol oxidase AA3, subunit I	
17	 38.24       21393..22004    	 +	203	46906241	qoxC	LMOf2365_0018	-	quinol oxidase AA3, subunit III	
18	 37.84       22006..22338    	 +	110	46906242	qoxD	LMOf2365_0019	-	quinol oxidase AA3, subunit IV	
19	 34.58       22389..23507    	 -	372	46906243	-	LMOf2365_0020	-	conserved hypothetical protein	
20	 39.68       23733..25166    	 +	477	46906244	-	LMOf2365_0021	-	glycosyl hydrolase, family 1	
21	 38.56       25213..26034    	 -	273	46906245	-	LMOf2365_0022	-	conserved hypothetical protein	
22	 33.47 -1    26275..27015    	 +	246	46906246	-	LMOf2365_0023	-	transcriptional regulator, GntR family	
23	 41.29       27031..27432    	 +	133	46906247	-	LMOf2365_0024	-	PTS system, fructose-specific, IIA component	
24	 39.47       27432..27920    	 +	162	46906248	-	LMOf2365_0025	-	PTS system, mannose/fructose/sorbose family, IIB component	
25	 43.03 +1    27943..28746    	 +	267	46906249	-	LMOf2365_0026	-	PTS system, mannose-specific, IIC component, putative	
26	 39.78       28727..29548    	 +	273	46906250	-	LMOf2365_0027	-	PTS system, mannose/fructose/sorbose family, IID component	
27	 40.71       29576..30280    	 +	234	46906251	-	LMOf2365_0028	-	conserved hypothetical protein	
28	 39.72       30335..30976    	 +	213	46906252	-	LMOf2365_0029	-	cutC family protein	
29	 38.69       31181..33085    	 +	634	46906253	-	LMOf2365_0030	-	PTS system, beta-glucoside-specific, IIABC component	
30	 35.73       33167..34042    	 +	291	46906254	-	LMOf2365_0031	-	conserved hypothetical protein	
31	 33.49 -1    34191..34811    	 -	206	46906255	-	LMOf2365_0032	-	hypothetical protein	
32	 27.52 -2    35448..36170    	 -	240	46906256	-	LMOf2365_0034	-	membrane protein, putative	
33	 29.55 -2    36172..36885    	 -	237	46906257	-	LMOf2365_0035	-	membrane protein, putative	
34	 30.33 -2    36872..37636    	 -	254	46906258	-	LMOf2365_0036	-	membrane protein, putative	
35	 33.78 -1    37707..38156    	 -	149	46906259	-	LMOf2365_0037	-	conserved hypothetical protein	
36	 41.00       38379..38717    	 +	112	46906260	-	LMOf2365_0038	-	conserved hypothetical protein	
37	 36.54       38754..39563    	 -	269	46906261	-	LMOf2365_0039	-	hydrolase, haloacid dehalogenase-like family	
38	 37.41       39580..40635    	 -	351	46906262	-	LMOf2365_0040	-	transcriptional regulator, LacI family	
39	 40.68       40837..41802    	 +	321	46906263	-	LMOf2365_0041	-	ROK family protein	
40	 40.78       41799..44201    	 +	800	46906264	-	LMOf2365_0042	-	glycosyl hydrolase, family 9	
41	 39.74       44214..45572    	 +	452	46906265	-	LMOf2365_0043	-	PTS system, beta-glucoside-specific, IIC component	
42	 38.49       45574..46659    	 +	361	46906266	-	LMOf2365_0044	-	SIS domain protein	
43	 37.91       46891..47916    	 +	341	46906267	argF-1	LMOf2365_0045	-	ornithine carbamoyltransferase	
44	 37.23       47989..49374    	 +	461	46906268	-	LMOf2365_0046	-	amino acid permease family protein	
45	 40.09       49361..50455    	 +	364	46906269	-	LMOf2365_0047	-	peptidyl-arginine deiminase-like protein	
46	 40.02       50468..51409    	 +	313	46906270	arcC	LMOf2365_0048	-	carbamate kinase	
47	 38.83       51510..52619    	 +	369	46906271	-	LMOf2365_0049	-	conserved hypothetical protein	
48	 32.69 -1    52636..53415    	 +	259	46906272	-	LMOf2365_0050	-	phosphosugar-binding protein	
49	 34.70       53519..54178    	 +	219	46906273	-	LMOf2365_0051	-	DedA family protein	
50	 37.88       54257..55489    	 +	410	46906274	arcA	LMOf2365_0052	-	arginine deiminase	
51	 35.71       55768..56061    	 +	97	46906275	rpsF	LMOf2365_0053	-	ribosomal protein S6	
52	 40.97       56117..56653    	 +	178	46906276	ssb-1	LMOf2365_0054	-	single-strand binding protein	
53	 39.58       56697..56936    	 +	79	46906277	rpsR	LMOf2365_0055	-	ribosomal protein S18	
54	 32.52 -1    57089..57700    	 +	203	46906278	-	LMOf2365_0056	-	lipoprotein, putative	
55	 35.61       57957..58571    	 +	204	46906279	-	LMOf2365_0057	-	accessory gene regulator protein B, putative	
56	 30.07 -2    58564..58716    	 +	50	46906280	-	LMOf2365_0058	-	accessory gene regulator protein D, putative	
57	 31.79 -1    58812..60107    	 +	431	46906281	agrC	LMOf2365_0059	-	accessory gene regulator protein C	
58	 34.84       60126..60854    	 +	242	46906282	agrA	LMOf2365_0060	-	accessory gene regulator protein A	
59	 42.55 +1    61021..62994    	 +	657	46906283	-	LMOf2365_0061	-	DHH subfamily 1 protein	
60	 35.12       62997..63443    	 +	148	46906284	rplI	LMOf2365_0062	-	ribosomal protein L9	
61	 42.35 +1    63468..64820    	 +	450	46906285	dnaB	LMOf2365_0063	-	replicative DNA helicase	
62	 30.00 -2    64876..65025    	 +	49	46906286	-	LMOf2365_0064	-	hypothetical protein	
63	 39.98       65079..66371    	 +	430	46906287	purA	LMOf2365_0065	-	adenylosuccinate synthetase	
64	 26.80 -2    66420..66572    	 +	50	46906288	-	LMOf2365_0066	-	hypothetical protein	
65	 38.44       66674..66967    	 +	97	46906289	-	LMOf2365_0067	-	conserved hypothetical protein	
66	 36.51       67116..70322    	 +	1068	46906290	-	LMOf2365_0068	-	membrane protein, putative	
67	 38.57       70312..70827    	 +	171	46906291	-	LMOf2365_0069	-	conserved hypothetical protein	
68	 34.13 -1    70845..71096    	 +	83	46906292	-	LMOf2365_0070	-	conserved hypothetical protein	
69	 35.17       71118..72314    	 +	398	46906293	-	LMOf2365_0071	-	conserved hypothetical protein	
70	 40.16       72328..76821    	 +	1497	46906294	-	LMOf2365_0072	-	diarrheal toxin/FtsK/SpoIIIE family protein	
71	 34.85       76841..77236    	 +	131	46906295	-	LMOf2365_0073	-	conserved domain protein	
72	 35.67       77229..77528    	 +	99	46906296	-	LMOf2365_0074	-	conserved hypothetical protein	
73	 35.47       77525..78226    	 +	233	46906297	-	LMOf2365_0075	-	conserved hypothetical protein	
74	 36.64       78227..78559    	 +	110	46906298	-	LMOf2365_0076	-	conserved hypothetical protein	
75	 44.31 +1    78573..80249    	 +	558	46906299	-	LMOf2365_0077	-	conserved hypothetical protein	
76	 23.59 -2    80262..80651    	 +	129	46906300	-	LMOf2365_0078	-	conserved hypothetical protein	
77	 24.33 -2    80789..81199    	 +	136	46906301	-	LMOf2365_0079	-	conserved hypothetical protein	
78	 35.29       81384..81638    	 +	84	46906302	-	LMOf2365_0080	-	hypothetical protein	
79	 30.56 -2    81770..82093    	 +	107	46906303	-	LMOf2365_0081	-	conserved hypothetical protein	
80	 43.17 +1    82350..84047    	 +	565	46906304	-	LMOf2365_0082	-	conserved hypothetical protein	
81	 25.75 -2    84049..84483    	 +	144	46906305	-	LMOf2365_0083	-	conserved hypothetical protein	
82	 39.24       84907..85617    	 +	236	46906306	-	LMOf2365_0084	-	hypothetical protein	
83	 33.33 -1    85618..85941    	 +	107	46906307	-	LMOf2365_0085	-	conserved hypothetical protein	
84	 37.07       86108..86401    	 +	97	46906308	-	LMOf2365_0086	-	hypothetical protein	
85	 27.52 -2    86538..87260    	 +	240	46906309	-	LMOf2365_0087	-	membrane protein, putative	
86	 36.61       87500..87682    	 +	60	46906310	-	LMOf2365_0088	-	hypothetical protein	
87	 32.35 -1    88139..88240    	 +	33	46906311	-	LMOf2365_0089	-	hypothetical protein	
88	 30.18 -2    88367..88651    	 +	94	46906312	-	LMOf2365_0090	-	hypothetical protein	
89	 26.00 -2    88639..89088    	 +	149	46906313	-	LMOf2365_0091	-	hypothetical protein	
90	 44.96 +1    89326..90099    	 +	257	46906314	-	LMOf2365_0092	-	transferase, putative	
91	 41.60 +1    90096..91148    	 +	350	46906315	ada	LMOf2365_0093	-	Ada regulatory protein	
92	 38.24       91170..91883    	 -	237	46906316	-	LMOf2365_0094	-	pentapeptide repeats domain protein	
93	 44.10 +1    91939..92895    	 +	318	46906317	-	LMOf2365_0095	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein	
94	 37.66       93236..94759    	 +	507	46906318	-	LMOf2365_0096	-	conserved domain protein	
95	 30.42 -2    94741..95118    	 +	125	46906319	-	LMOf2365_0097	-	hypothetical protein	
96	 27.83 -2    95591..95935    	 +	114	46906320	-	LMOf2365_0098	-	hypothetical protein	
97	 34.80       96061..96402    	 +	113	46906321	-	LMOf2365_0099	-	hypothetical protein	
98	 39.84       96469..96837    	 -	122	46906322	-	LMOf2365_0100	-	transcriptional regulator, MerR family	
99	 41.87 +1    96893..97876    	 -	327	46906323	-	LMOf2365_0101	-	oxidoreductase, aldo/keto reductase family	
100	 32.17 -1    98267..98956    	 +	229	46906324	-	LMOf2365_0102	-	conserved hypothetical protein	

 
 37.91 MEAN 
 
 3.60  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.