IslandPath Analysis: Leptospira interrogans serovar Copenhageni, chromosome II



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.46   STD DEV: 3.21
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome II, complete sequence - 0..350181
264 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 41.60       15..2531     	 +	838	45655586	-	LIC20001	-	conserved hypothetical protein	
2	 38.16        2491..3423     	 +	310	45655587	metF	LIC20002	-	5,10 methylene tetrahydrofolate reductase	
3	 37.58        4064..4888     	 -	274	45655588	-	LIC20005	-	conserved hypothetical protein	
4	 36.66        5214..6086     	 +	290	45655589	cof	LIC20006	-	haloacid dehalogenase-like protein	
5	 37.11        6057..6347     	 -	96	45655590	-	LIC20007	-	conserved hypothetical protein	
6	 37.47        6384..7253     	 +	289	45655591	hemA	LIC20008	-	glutamyl-tRNA reductase	
7	 38.69        7223..8866     	 +	547	45655592	hemC	LIC20009	-	porphobilinogen deaminase	
8	 39.94 +1     8835..9788     	 +	317	45655593	hemB	LIC20010	-	delta-aminolevulinic acid dehydratase	
9	 40.32 +1     9785..11116    	 +	443	45655594	hemL	LIC20011	-	glutamate-1-semialdehyde aminotransferase	
10	 35.84       11116..12033    	 +	305	45655595	-	LIC20012	-	histidine kinase sensor protein	
11	 40.69 +1    12030..12722    	 +	230	45655596	-	LIC20013	-	response regulator	
12	 37.05       12712..13734    	 +	340	45655597	hemE	LIC20014	-	uroporphyrinogen decarboxylase	
13	 37.84       13749..15080    	 +	443	45655598	hemN	LIC20015	-	O2-independent coproporphyrinogen III oxidase	
14	 39.33       15160..16143    	 +	327	45655599	-	LIC20016	-	conserved hypothetical protein	
15	 37.38       16251..17534    	 +	427	45655600	hemG	LIC20017	-	protoporphyrinogen oxidase	
16	 35.97       18373..19281    	 -	302	45655601	hemH	LIC20018	-	ferrochelatase	
17	 36.93       19541..20680    	 -	379	45655602	-	LIC20019	-	conserved hypothetical protein	
18	 38.13       20842..21759    	 +	305	45655603	-	LIC20020	-	ParA	
19	 36.16       21752..22459    	 +	235	45655604	-	LIC20021	-	ParB	
20	 40.46 +1    22559..23161    	 +	200	45655605	-	LIC20022	-	azoreductase	
21	 32.82 -1    23764..24927    	 -	387	45655606	-	LIC20023	-	intercellular adhesion protein C	
22	 38.61       25023..25382    	 +	119	45655608	-	LIC20025	-	cyclic nucleotide binding protein	
23	 39.81 +1    25778..26533    	 +	251	45655609	-	LIC20026	-	short-chain dehydrogenase	
24	 36.78       26509..27060    	 +	183	45655610	wzb	LIC20027	-	phosphotyrosine protein phosphatase	
25	 40.90 +1    27090..28358    	 +	422	45655611	ndh	LIC20028	-	NADH dehydrogenase	
26	 37.67       28376..28813    	 +	145	45655612	-	LIC20029	-	conserved hypothetical protein	
27	 31.86 -1    29256..29864    	 -	202	45655613	-	LIC20030	-	conserved hypothetical protein	
28	 35.88       30234..31058    	 +	274	45655614	-	LIC20031	-	short-chain dehydrogenase	
29	 37.59       31068..31490    	 +	140	45655615	-	LIC20032	-	conserved hypothetical protein	
30	 39.52       31552..31923    	 +	123	45655616	-	LIC20033	-	conserved hypothetical protein	
31	 33.99       32250..33320    	 +	356	45655617	-	LIC20034	-	conserved hypothetical protein	
32	 37.72       34573..35895    	 +	440	45655618	-	LIC20035	-	conserved hypothetical protein	
33	 36.59       37317..37931    	 +	204	45655619	-	LIC20036	-	conserved hypothetical protein	
34	 38.92       37992..39065    	 +	357	45655620	moxR	LIC20037	-	methanol dehydrogenase regulator	
35	 34.90       39072..39902    	 +	276	45655621	-	LIC20038	-	conserved hypothetical protein	
36	 33.45       39899..40768    	 +	289	45655622	-	LIC20039	-	conserved hypothetical protein	
37	 36.45       40741..41703    	 +	320	45655623	batA	LIC20040	-	BatA	
38	 35.44       41700..42743    	 +	347	45655624	batB	LIC20041	-	BatB	
39	 35.22       42740..43429    	 +	229	45655625	batC	LIC20042	-	BatC	
40	 36.62       43426..45069    	 +	547	45655626	batD	LIC20043	-	BatD	
41	 37.06       45066..46889    	 +	607	45655627	htpG	LIC20044	-	HtpG	
42	 35.26       46907..47476    	 +	189	45655628	-	LIC20045	-	conserved hypothetical protein	
43	 32.32 -1    47457..47948    	 -	163	45655629	-	LIC20046	-	conserved hypothetical protein	
44	 40.34 +1    48178..49776    	 +	532	45655630	-	LIC20047	-	conserved hypothetical protein	
45	 34.78       49784..50128    	 -	114	45655631	-	LIC20048	-	anti-sigma factor antagonist	
46	 35.78       50125..51144    	 -	339	45655632	-	LIC20049	-	conserved hypothetical protein	
47	 35.18       51217..52137    	 +	306	45655633	-	LIC20050	-	conserved hypothetical protein	
48	 33.54       52134..52613    	 +	159	45655634	-	LIC20051	-	conserved hypothetical protein	
49	 37.71       52991..53812    	 +	273	45655635	scd	LIC20052	-	fatty acid desaturase	
50	 33.93       55114..55788    	 +	224	45655636	-	LIC20053	-	conserved hypothetical protein	
51	 37.48       57065..57715    	 +	216	45655637	-	LIC20054	-	conserved hypothetical protein	
52	 37.33       58042..58917    	 -	291	45655638	-	LIC20055	-	hypothetical protein	
53	 35.01       59235..59771    	 +	178	45655639	-	LIC20056	-	conserved hypothetical protein	
54	 40.87 +1    59901..60869    	 -	322	45655640	argK	LIC20057	-	LAO/AO transport system kinase	
55	 41.23 +1    60877..62889    	 -	670	45655641	mcm2	LIC20058	-	methylmalonyl-CoA mutase	
56	 33.48       62996..64333    	 +	445	45655642	-	LIC20059	-	conserved hypothetical protein	
57	 33.33       65464..66156    	 +	230	45655643	-	LIC20060	-	conserved hypothetical protein	
58	 33.05 -1    66779..67852    	 -	357	45655644	-	LIC20061	-	thiol-disulfide interchange like protein	
59	 38.35       67981..68259    	 +	92	45655645	hisE	LIC20062	-	phosphoribosyl-ATP pyrophosphatase	
60	 31.16 -1    68263..70194    	 +	643	45655646	-	LIC20063	-	conserved hypothetical protein	
61	 42.35 +1    70663..71427    	 +	254	45655647	fabG	LIC20064	-	3-oxoacyl-(acyl-carrier protein) reductase	
62	 41.88 +1    71920..72153    	 +	77	45655648	acpP	LIC20065	-	acyl carrier protein	
63	 35.08       72207..72950    	 +	247	45655649	rnC	LIC20066	-	dsRNase III	
64	 37.59       73327..73914    	 +	195	45655650	-	LIC20067	-	MutT-like protein	
65	 37.11       73911..74996    	 +	361	45655651	aroB	LIC20068	-	3-dehydroquinate synthase	
66	 35.71       74996..75877    	 +	293	45655652	-	LIC20069	-	small conductance mechanosensitive ion channel	
67	 30.08 -1    76088..76579    	 +	163	45655653	-	LIC20070	-	conserved hypothetical protein	
68	 39.56       77095..78651    	 +	518	45655654	-	LIC20071	-	putative FAD-dependent dehydrogenase	
69	 41.67 +1    78701..79240    	 +	179	45655655	-	LIC20072	-	conserved hypothetical protein	
70	 37.23       79841..80251    	 -	136	45655656	-	LIC20073	-	conserved hypothetical protein	
71	 36.38       80308..82245    	 -	645	45655657	-	LIC20074	-	long-chain-fatty-acid--CoA ligase	
72	 35.54       82407..85346    	 +	979	45655658	-	LIC20075	-	adenylate/guanylate cyclase	
73	 39.18       85904..86656    	 -	250	45655659	-	LIC20076	-	putative S-adenosyl methionine dependent methyltransferase like protein	
74	 35.01       86696..88126    	 -	476	45655660	-	LIC20077	-	polysaccharide deacetylase	
75	 40.31 +1    88319..88834    	 -	171	45655661	-	LIC20078	-	conserved hypothetical protein	
76	 34.69       89587..90396    	 +	269	45655662	nagD	LIC20079	-	haloacid dehalogenase-like protein	
77	 34.97       90403..90831    	 -	142	45655663	-	LIC20080	-	4-hydroxybenzoyl-CoA thioesterase	
78	 30.40 -1    91097..91675    	 -	192	45655664	-	LIC20081	-	transcriptional regulator (TetR family)	
79	 43.17 +2    92473..93489    	 +	338	45655665	-	LIC20082	-	transcriptional regulator (ArsR family)	
80	 41.72 +1    93491..94801    	 +	436	45655666	ahcY	LIC20083	-	S-adenosylhomocysteine hydrolase	
81	 40.33 +1    94874..95173    	 +	99	45655667	-	LIC20084	-	ferredoxin	
82	 40.52 +1    95220..98963    	 +	1247	45655668	metH	LIC20085	-	methionine synthase	
83	 37.46       99071..99409    	 +	112	45655669	-	LIC20086	-	conserved hypothetical protein	
84	 35.37       99745..100677   	 -	310	45655670	-	LIC20087	-	outer membrane protein	
85	 39.27      100789..102084   	 +	431	45655671	pfp	LIC20088	-	pyrophosphate-fructose-6-phosphate 1-phosphotransferase	
86	 37.17      102283..104028   	 -	581	45655672	-	LIC20089	-	sigma factor regulatory protein	
87	 38.98      104206..105090   	 -	294	45655673	argB	LIC20090	-	acetylglutamate kinase	
88	 34.68      105080..105898   	 +	272	45655674	-	LIC20091	-	short-chain dehydrogenase	
89	 34.65      106836..108578   	 -	580	45655675	-	LIC20092	-	conserved hypothetical protein	
90	 37.80      108571..109062   	 -	163	45655676	bcp	LIC20093	-	bacterioferritin comigratory protein	
91	 36.22      109614..111380   	 +	588	45655677	-	LIC20094	-	adenylate/guanylate cyclase	
92	 38.21      112543..112911   	 +	122	45655678	-	LIC20095	-	conserved hypothetical protein	
93	 39.62      112958..114055   	 +	365	45655679	-	LIC20096	-	conserved hypothetical protein	
94	 37.64      114072..114884   	 +	270	45655680	-	LIC20097	-	short-chain dehydrogenase	
95	 35.67      114933..115832   	 -	299	45655681	-	LIC20098	-	phage-related integrase/recombinase	
96	 35.56      115948..116487   	 -	179	45655682	aroK	LIC20099	-	shikimate kinase	
97	 37.09      116484..117335   	 -	283	45655683	-	LIC20100	-	conserved hypothetical protein	
98	 39.31      117341..117892   	 -	183	45655684	cheD	LIC20101	-	chemotaxis MCP methylation stimulating protein	
99	 37.00      118019..119245   	 +	408	45655685	traB	LIC20102	-	pheromone shutdown protein	
100	 33.16 -1   119569..120132   	 +	187	45655686	-	LIC20103	-	conserved hypothetical protein	

 
 36.46 MEAN 
 
 3.21  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.