IslandPath Analysis: Leptospira interrogans serovar Copenhageni, chromosome I



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.17   STD DEV: 3.74
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence - 0..4277185
3394 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 31.61      292..1623     	 +	443	45655915	dnaA	LIC10001	-	chromosomal replication initiator protein	
2	 32.35 -1     3279..4400     	 +	373	45655916	dnaN	LIC10002	-	DNA polymerase III beta subunit	
3	 30.42 -1     5062..6159     	 +	365	45655917	recF	LIC10003	-	DNA repair and genetic recombination protein	
4	 32.47        6156..6620     	 +	154	45655918	-	LIC10004	-	conserved hypothetical protein	
5	 37.14        6686..8605     	 +	639	45655919	-	LIC10005	-	DNA gyrase subunit B	
6	 36.33        8624..11128    	 +	834	45655920	gyrA	LIC10006	-	DNA gyrase subunit A	
7	 37.58       11133..12122    	 +	329	45655921	-	LIC10007	-	nifR3-like protein	
8	 44.35 +2    12129..12473    	 +	114	45655922	-	LIC10008	-	conserved hypothetical protein	
9	 34.15       12715..13452    	 +	245	45655923	-	LIC10009	-	putative lipoprotein	
10	 35.13       13804..14805    	 -	333	45655924	-	LIC10010	-	conserved hypothetical protein	
11	 41.53 +1    15216..15776    	 -	186	45655925	lipL21	LIC10011	-	LipL21	
12	 33.27       15855..17462    	 +	535	45655926	-	LIC10012	-	conserved hypothetical protein	
13	 32.44       17484..18377    	 +	297	45655927	-	LIC10013	-	sigma 54 activator	
14	 31.50 -1    18319..19407    	 -	362	45655928	-	LIC10014	-	conserved hypothetical protein	
15	 40.74 +1    19980..20195    	 +	71	45655929	-	LIC10015	-	conserved hypothetical protein	
16	 32.09 -1    20186..20749    	 -	187	45655930	maf	LIC10016	-	Maf-like protein	
17	 32.67       20801..21706    	 +	301	45655931	-	LIC10017	-	conserved hypothetical protein	
18	 31.35 -1    21851..22354    	 +	167	45655932	-	LIC10018	-	putative lipoprotein	
19	 38.71       22359..23102    	 +	247	45655933	-	LIC10019	-	3-oxoacyl-acyl carrier protein reductase	
20	 32.35 -1    23118..23726    	 +	202	45655934	-	LIC10020	-	conserved hypothetical protein	
21	 40.29 +1    24216..25898    	 +	560	45655935	-	LIC10021	-	putative lipoprotein	
22	 31.13 -1    26728..27090    	 -	120	45655936	-	LIC10022	-	arsenate reductase	
23	 40.34 +1    28185..29198    	 +	337	45655937	fliG	LIC10023	-	FliG	
24	 30.57 -1    29263..31539    	 +	758	45655938	-	LIC10024	-	adenylate/guanylate cyclase	
25	 30.11 -1    32228..32785    	 +	185	45655939	-	LIC10025	-	conserved hypothetical protein	
26	 30.31 -1    32934..33959    	 +	341	45655940	-	LIC10026	-	conserved hypothetical protein	
27	 40.57 +1    34184..34888    	 +	234	45655941	-	LIC10027	-	conserved hypothetical protein	
28	 36.39       34892..35251    	 +	119	45655942	-	LIC10028	-	putative lipoprotein	
29	 40.40 +1    35248..36096    	 -	282	45655943	-	LIC10029	-	inositol monophosphatase	
30	 33.33       36116..37027    	 -	303	45655944	-	LIC10030	-	conserved hypothetical protein	
31	 35.86       37639..39615    	 -	658	45655945	lacZ	LIC10031	-	beta-galactosidase	
32	 35.90       39801..40658    	 +	285	45655946	-	LIC10032	-	conserved hypothetical protein	
33	 29.67 -1    40666..41238    	 +	190	45655947	-	LIC10033	-	conserved hypothetical protein	
34	 34.20       41220..41915    	 +	231	45655948	-	LIC10034	-	conserved hypothetical protein	
35	 32.67       41921..44176    	 +	751	45655949	rnR	LIC10035	-	ribonuclease R	
36	 34.11       44336..44848    	 +	170	45655950	-	LIC10036	-	conserved hypothetical protein	
37	 39.10       44852..46465    	 +	537	45655951	-	LIC10037	-	GMC oxidoreductase	
38	 32.74       46607..48115    	 +	502	45655952	-	LIC10038	-	conserved hypothetical protein	
39	 30.64 -1    48326..49030    	 -	234	45655953	aroD	LIC10039	-	3-dehydroquinate dehydratase	
40	 35.91       49034..50002    	 -	322	45655954	kpsF	LIC10040	-	polysialic acid capsule expression protein	
41	 33.89       49986..50525    	 -	179	45655955	-	LIC10041	-	transcription activator or transcription antitermination factor	
42	 31.04 -1    50509..50988    	 -	159	45655956	-	LIC10042	-	conserved hypothetical protein	
43	 35.81       52070..53767    	 +	565	45655957	aer	LIC10043	-	Aer	
44	 37.54       54372..55250    	 +	292	45655958	-	LIC10044	-	conserved hypothetical protein	
45	 37.91       55247..56185    	 +	312	45655959	-	LIC10045	-	dTDP-glucose 4-6-dehydratase	
46	 39.91 +1    56259..57428    	 +	389	45655960	pntA	LIC10046	-	proton-translocating transhydrogenase, subunit alpha part 1	
47	 39.11       57387..57923    	 -	178	45655961	-	LIC10047	-	conserved hypothetical protein	
48	 36.29       57920..59239    	 -	439	45655962	hisS	LIC10048	-	histidyl-tRNA synthetase	
49	 35.68       59246..60394    	 -	382	45655963	-	LIC10049	-	conserved hypothetical protein	
50	 36.00       60404..62467    	 -	687	45655964	-	LIC10050	-	peptidoglycan-associated cytoplasmic membrane protein	
51	 32.62       62561..63403    	 +	280	45655965	folP	LIC10051	-	7,8-dihydropteroate synthase protein	
52	 30.14 -1    64172..65422    	 -	416	45655966	-	LIC10052	-	conserved hypothetical protein	
53	 33.89       65480..66382    	 -	300	45655967	-	LIC10053	-	conserved hypothetical protein	
54	 36.54       66432..67397    	 +	321	45655968	rlpA	LIC10054	-	putative lipoprotein	
55	 40.11 +1    68117..68824    	 -	235	45655969	cysE	LIC10055	-	serine acetyltransferase	
56	 36.35       69026..69952    	 +	308	45655970	-	LIC10056	-	conserved hypothetical protein	
57	 35.65       70123..71331    	 +	402	45655971	-	LIC10057	-	conserved hypothetical protein	
58	 31.67 -1    72115..73497    	 -	460	45655972	-	LIC10058	-	drug:Na+ antiporter of the multi antimicrobial extrusion family	
59	 36.53       73514..74797    	 -	427	45655973	-	LIC10059	-	proton glutamate symport protein	
60	 34.90       74937..78122    	 +	1061	45655974	-	LIC10060	-	conserved hypothetical protein	
61	 34.68       78115..79005    	 +	296	45655975	-	LIC10061	-	conserved hypothetical protein	
62	 28.51 -2    79606..79833    	 +	75	45655976	-	LIC10062	-	conserved hypothetical protein	
63	 33.33       79879..83085    	 +	1068	45655977	-	LIC10063	-	histidine kinase sensor protein	
64	 39.54       83798..84280    	 -	160	45655978	-	LIC10064	-	conserved hypothetical protein	
65	 35.06       84344..84865    	 -	173	45655979	dcd	LIC10065	-	deoxycytidine triphosphate deaminase	
66	 37.93       84866..85648    	 -	260	45655980	-	LIC10066	-	enoyl-Coa hydratase/isomerase family	
67	 36.23       85681..86475    	 +	264	45655981	-	LIC10067	-	conserved hypothetical protein	
68	 41.90 +1    87380..87589    	 +	69	45655982	-	LIC10068	-	conserved hypothetical protein	
69	 33.58       87678..88076    	 -	132	45655983	glo1	LIC10069	-	glyoxylase I	
70	 31.04 -1    88156..89244    	 -	362	45655984	-	LIC10070	-	conserved hypothetical protein	
71	 35.59       89241..90881    	 -	546	45655985	-	LIC10071	-	conserved hypothetical protein	
72	 31.47 -1    90975..91724    	 +	249	45655986	-	LIC10072	-	conserved hypothetical protein	
73	 34.98       91713..92564    	 -	283	45655987	-	LIC10073	-	3-demethylubiquinone-9 3-methyltransferase	
74	 39.95 +1    92703..93548    	 +	281	45655988	dapF	LIC10074	-	diaminopimelate epimerase	
75	 36.15       93555..94265    	 -	236	45655989	-	LIC10075	-	conserved hypothetical protein	
76	 41.75 +1    94298..94582    	 -	94	45655990	-	LIC10076	-	conserved hypothetical protein	
77	 34.20       96008..96355    	 +	115	45655991	-	LIC10077	-	conserved hypothetical protein	
78	 31.94 -1    96359..96934    	 -	191	45655992	-	LIC10078	-	conserved hypothetical protein	
79	 40.45 +1    97126..97659    	 -	177	45655993	-	LIC10079	-	conserved hypothetical protein	
80	 27.49 -2    98030..98851    	 -	273	45655994	-	LIC10080	-	conserved hypothetical protein	
81	 35.20       99567..99887    	 -	106	45655995	-	LIC10082	-	conserved hypothetical protein	
82	 35.12       99931..100377   	 -	148	45655996	-	LIC10083	-	conserved hypothetical protein	
83	 32.85      100706..101953   	 +	415	45655997	-	LIC10086	-	RNA methyltransferase	
84	 30.15 -1   102232..102891   	 +	219	45655998	-	LIC10087	-	conserved hypothetical protein	
85	 38.56      103786..105066   	 +	426	45655999	-	LIC10088	-	conserved hypothetical protein	
86	 34.30      105286..106011   	 +	241	45656000	-	LIC10089	-	conserved hypothetical protein	
87	 38.70      106049..107596   	 +	515	45656001	-	LIC10090	-	conserved hypothetical protein	
88	 35.82      107605..108648   	 +	347	45656002	-	LIC10091	-	putative lipoprotein	
89	 29.02 -1   108645..109502   	 +	285	45656003	-	LIC10092	-	metallo-beta-lactamase	
90	 33.33      109973..110899   	 -	308	45656004	-	LIC10093	-	conserved hypothetical protein	
91	 36.69      111018..113075   	 -	685	45656005	-	LIC10094	-	long-chain-fatty-acid CoA ligase	
92	 37.54      113248..113604   	 -	118	45656006	-	LIC10095	-	conserved hypothetical protein	
93	 35.30      113577..114236   	 -	219	45656007	aat	LIC10096	-	leucyl/phenylalanyl-tRNA-protein transferase	
94	 34.97      114286..114834   	 -	182	45656008	ligT	LIC10097	-	2'-5' RNA ligase	
95	 32.26 -1   114882..116657   	 -	591	45656009	pabB	LIC10098	-	para-aminobenzoate synthase component I	
96	 35.65      116680..118833   	 +	717	45656010	-	LIC10099	-	histidine kinase sensor protein	
97	 29.90 -1   119602..119805   	 -	67	45656011	-	LIC10100	-	conserved hypothetical protein	
98	 34.26      120143..121645   	 -	500	45656012	met-7	LIC10101	-	cystathionine gamma-synthase	
99	 38.40      121705..122769   	 -	354	45656013	prfA	LIC10102	-	peptide chain release factor 1	
100	 37.79      122810..123415   	 +	201	45656014	-	LIC10103	-	conserved hypothetical protein	

 
 36.17 MEAN 
 
 3.74  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.