IslandPath Analysis: Lactobacillus johnsonii NCC 533



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.52   STD DEV: 3.16
Lactobacillus johnsonii NCC 533, complete genome - 0..1992676
1821 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 36.63        1..1365     	 +	454	42518085	-	LJ0001	-	chromosomal replication initiator protein DnaA	
2	 34.04        1546..2676     	 +	376	42518086	-	LJ0002	-	DNA polymerase III, beta chain	
3	 38.67 +1     2951..3100     	 +	49	42518087	-	LJ0002b	-	hypothetical protein	
4	 32.98        3104..4228     	 +	374	42518088	-	LJ0003	-	DNA replication and repair protein RecF	
5	 39.43 +1     4229..6196     	 +	655	42518089	-	LJ0004	-	DNA gyrase subunit B	
6	 38.63 +1     6207..8696     	 +	829	42518090	-	LJ0005	-	DNA gyrase subunit A	
7	 35.35        8883..9179     	 +	98	42518091	-	LJ0006	-	30S ribosomal protein S7	
8	 40.08 +1     9213..9731     	 +	172	42518092	-	LJ0007	-	single-strand binding protein	
9	 43.46 +2     9756..9992     	 +	78	42518093	-	LJ0008	-	30S ribosomal protein S19	
10	 31.26 -1    10086..11003    	 +	305	42518094	-	LJ0009	-	hypothetical protein	
11	 36.75       11110..13128    	 +	672	42518095	-	LJ0010	-	hypothetical protein	
12	 33.55       13140..13595    	 +	151	42518096	-	LJ0011	-	50S ribosomal protein L10	
13	 37.48       13598..14971    	 +	457	42518097	-	LJ0012	-	replicative DNA helicase	
14	 37.97 +1    15069..15953    	 +	294	42518098	-	LJ0013	-	fructokinase	
15	 36.75       16017..17159    	 -	380	42518099	-	LJ0014	-	hypothetical protein	
16	 37.05       17277..19295    	 -	672	42518100	-	LJ0015	-	hypothetical protein	
17	 34.89       19628..20980    	 -	450	42518101	-	LJ0016	-	hypothetical protein	
18	 32.30       21517..22680    	 +	387	42518102	-	LJ0017	-	hypothetical protein	
19	 33.33       22717..23577    	 -	286	42518103	-	LJ0018	-	hypothetical protein	
20	 35.49       23719..24366    	 +	215	42518104	-	LJ0019	-	hypothetical protein	
21	 25.84 -2    24563..25363    	 -	266	42518105	-	LJ0020	-	hypothetical protein	
22	 26.67 -2    25638..26702    	 +	354	42518106	-	LJ0021	-	hypothetical protein	
23	 26.37 -2    26708..27913    	 +	401	42518107	-	LJ0022	-	major facilitator superfamily permease	
24	 36.09       28305..28994    	 -	229	42518108	-	LJ0023	-	hypothetical protein	
25	 35.88       29130..29837    	 +	235	42518109	-	LJ0024	-	hypothetical protein	
26	 38.45 +1    29872..30711    	 -	279	42518110	-	LJ0025	-	hypothetical protein	
27	 30.47 -1    31207..32814    	 +	535	42518111	-	LJ0026	-	ABC transporter ATPase and permease components	
28	 30.49 -1    32837..33646    	 -	269	42518112	-	LJ0027	-	hypothetical protein	
29	 38.02 +1    33801..35720    	 +	639	42518113	-	LJ0028	-	hypothetical protein	
30	 37.90 +1    35975..37309    	 -	444	42518114	-	LJ0029	-	hypothetical protein	
31	 34.03       37838..39571    	 -	577	42518115	-	LJ0030	-	endopeptidase O	
32	 27.57 -2    39672..40538    	 +	288	42518116	-	LJ0031	-	hypothetical protein	
33	 34.04       40727..42001    	 +	424	42518117	-	LJ0032	-	major facilitator superfamily permease	
34	 41.81 +2    42139..43164    	 -	341	42518118	-	LJ0033	-	transposase	
35	 31.18 -1    43272..44198    	 -	308	42518119	-	LJ0034	-	hypothetical protein	
36	 35.19       44502..44663    	 +	53	42518120	-	LJ0034b	-	hypothetical protein	
37	 44.19 +2    44703..44969    	 +	88	42518121	-	LJ0035	-	hypothetical protein	
38	 36.35       45106..45933    	 +	275	42518122	-	LJ0036	-	exodeoxyribonuclease	
39	 34.57       46005..48845    	 +	946	42518123	-	LJ0037	-	hypothetical protein	
40	 34.91       48935..49441    	 +	168	42518124	-	LJ0038	-	hypothetical protein	
41	 35.21       49555..49821    	 +	88	42518125	-	LJ0039	-	hypothetical protein	
42	 33.33       49857..50090    	 -	77	42518126	-	LJ0040	-	hypothetical protein	
43	 33.05       50221..51270    	 +	349	42518127	-	LJ0041	-	hypothetical protein	
44	 35.96       51471..52805    	 +	444	42518128	-	LJ0042	-	hypothetical protein	
45	 40.52 +1    52848..54002    	 -	384	42518129	-	LJ0043	-	inosine-5-monophosphate dehydrogenase	
46	 33.51       54076..54651    	 -	191	42518130	-	LJ0044	-	hypothetical protein	
47	 40.83 +1    54728..55741    	 -	337	42518131	-	LJ0045	-	D-lactate dehydrogenase	
48	 33.75       55999..58611    	 +	870	42518132	-	LJ0046	-	hypothetical protein	
49	 38.72 +1    59228..65647    	 +	2139	42518133	-	LJ0047	-	hypothetical protein	
50	 35.13       65803..68754    	 +	983	42518134	-	LJ0048	-	hypothetical protein	
51	 35.84       68742..70337    	 +	531	42518135	-	LJ0049	-	hypothetical protein	
52	 32.04       70490..71416    	 +	308	42518136	-	LJ0050	-	hypothetical protein	
53	 38.63 +1    71548..73398    	 +	616	42518137	-	LJ0051	-	hypothetical protein	
54	 36.63       73489..74853    	 +	454	42518138	-	LJ0052	-	branched-chain amino acid transporter	
55	 33.74       74904..75638    	 +	244	42518139	-	LJ0053	-	2-heptaprenyl-1,4-naphthoquinone methyltransferase	
56	 34.75       75671..76585    	 +	304	42518140	-	LJ0054	-	prolinase PepPN	
57	 32.35       76704..77315    	 +	203	42518141	-	LJ0055	-	hypothetical protein	
58	 38.59 +1    77465..78415    	 -	316	42518142	-	LJ0056	-	conjugated bile salt hydrolase	
59	 38.20 +1    78431..79786    	 -	451	42518143	-	LJ0057	-	bile salt transporter	
60	 38.04 +1    79810..81168    	 -	452	42518144	-	LJ0058	-	bile salt transporter	
61	 36.24       81470..82330    	 -	286	42518145	-	LJ0059	-	hypothetical protein	
62	 35.54       82327..83277    	 -	316	42518146	-	LJ0060	-	hypothetical protein	
63	 33.02       83290..84240    	 -	316	42518147	-	LJ0061	-	hypothetical protein	
64	 36.48       84266..85090    	 -	274	42518148	-	LJ0062	-	hypothetical protein	
65	 35.39       85092..85868    	 -	258	42518149	-	LJ0063	-	hypothetical protein	
66	 32.24       86234..87511    	 +	425	42518150	-	LJ0064	-	transposase	
67	 36.72       87816..88523    	 +	235	42518151	-	LJ0065	-	two-component regulatory system response regulator	
68	 36.90       88570..90420    	 +	616	42518152	-	LJ0066	-	two-component regulatory system histidine kinase	
69	 32.43       90410..91738    	 +	442	42518153	-	LJ0067	-	hypothetical protein	
70	 32.24       91728..92549    	 +	273	42518154	-	LJ0068	-	hypothetical protein	
71	 36.47       92555..93352    	 +	265	42518155	-	LJ0069	-	hypothetical protein	
72	 37.35       93436..94656    	 +	406	42518156	-	LJ0070	-	serine protease do-like HtrA	
73	 34.79       95167..95646    	 +	159	42518157	-	LJ0071	-	hypothetical protein	
74	 34.40       95647..96300    	 -	217	42518158	-	LJ0072	-	ABC transporter permease component	
75	 33.56       96312..97658    	 -	448	42518159	-	LJ0073	-	ABC transporter ATPase component	
76	 36.35       97633..98196    	 -	187	42518160	-	LJ0074	-	hypothetical protein	
77	 33.01       98433..99359    	 +	308	42518161	-	LJ0075	-	hypothetical protein	
78	 39.84 +1    99394..100284   	 -	296	42518162	-	LJ0076	-	probable protease htpX-like protein	
79	 33.15      100293..100850   	 -	185	42518163	-	LJ0077	-	LemA-like protein	
80	 32.51      100966..102060   	 -	364	42518164	-	LJ0078	-	hypothetical protein	
81	 33.09      102236..102646   	 +	136	42518165	-	LJ0079	-	hypothetical protein	
82	 33.15      103041..103571   	 +	176	42518166	-	LJ0080	-	hypothetical protein	
83	 33.64      104036..105343   	 +	435	42518167	-	LJ0081	-	hypothetical protein	
84	 35.38      105353..106477   	 +	374	42518168	-	LJ0082	-	hypothetical protein	
85	 32.56      106592..107236   	 +	214	42518169	-	LJ0083	-	hypothetical protein	
86	 33.66      107238..108167   	 +	309	42518170	-	LJ0084	-	hypothetical protein	
87	 33.71      108250..108516   	 -	88	42518171	-	LJ0085	-	hypothetical protein	
88	 35.57      108770..109528   	 -	252	42518172	-	LJ0086	-	ABC transporter ATPase component	
89	 35.94      109518..111131   	 -	537	42518173	-	LJ0087	-	ABC transporter permease component	
90	 37.96 +1   111467..112093   	 -	208	42518174	-	LJ0088	-	3-methyladenine DNA glycosylase	
91	 31.68      112170..112532   	 +	120	42518175	-	LJ0089	-	hypothetical protein	
92	 33.72      112529..113311   	 -	260	42518176	-	LJ0090	-	hypothetical protein	
93	 36.29      113298..113534   	 -	78	42518177	-	LJ0091	-	methylated DNA-protein cysteine methyltransferase DNA binding domain	
94	 32.14      113494..113829   	 -	111	42518178	-	LJ0092	-	methylated DNA-protein cysteine methyltransferase ribonuclease-like domain	
95	 32.63      113946..114659   	 -	237	42518179	-	LJ0093	-	hypothetical protein	
96	 33.33      114786..115262   	 +	158	42518180	-	LJ0094	-	hypothetical protein	
97	 36.05      115330..116799   	 -	489	42518181	-	LJ0095	-	cardiolipinsynthetase	
98	 38.70 +1   116804..117511   	 -	235	42518182	-	LJ0096	-	hypothetical protein	
99	 36.14      117535..118461   	 -	308	42518183	-	LJ0097	-	hypothetical protein	
100	 36.61      118550..119281   	 +	243	42518184	-	LJ0098	-	hypothetical protein	

 
 34.52 MEAN 
 
 3.16  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.