IslandPath Analysis: Helicobacter hepaticus



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 0..1799146
1875 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 36.09      141..2423     	 +	760	32265500	-	HH0001	-	conserved hypothetical protein	
2	 37.05        2484..3989     	 +	501	32265501	trpC	HH0002	-	phosphoribosylanthranilate isomerase	
3	 35.91        3986..5032     	 +	348	32265502	-	HH0003	-	conserved hypothetical protein	
4	 32.79        5053..5607     	 -	184	32265503	-	HH0004	-	hypothetical protein	
5	 34.57        5633..6196     	 -	187	32265504	-	HH0005	-	conserved hypothetical protein	
6	 37.02        6282..6905     	 -	207	32265505	rnhB	HH0006	-	ribonuclease HII	
7	 37.77        7073..7681     	 -	202	32265506	hopZ	HH0007	-	conserved hypothetical protein	
8	 39.94 +1     7845..8888     	 -	347	32265507	-	HH0008	-	conserved hypothetical protein	
9	 39.15        9016..9273     	 -	85	32265508	rpmA	HH0009	-	50S ribosomal protein L27	
10	 36.19        9290..9604     	 -	104	32265509	rplU	HH0010	-	50S ribosomal protein L21	
11	 35.51        9758..10585    	 +	275	32265510	-	HH0011	-	conserved hypothetical protein	
12	 32.16 -1    10571..11254    	 -	227	32265511	-	HH0012	-	conserved hypothetical protein	
13	 37.04       11394..13283    	 +	629	32265512	gidA	HH0013	-	glucose inhibited division protein A	
14	 37.80       13308..13934    	 +	208	32265513	-	HH0014	-	conserved hypothetical protein	
15	 36.40       13936..15108    	 +	390	32265514	ygiC	HH0015	-	conserved hypothetical protein	
16	 31.74 -1    15102..16670    	 -	522	32265515	-	HH0016	-	hypothetical protein	
17	 41.16 +1    16692..18134    	 -	480	32265516	-	HH0017	-	aspartate oxidase	
18	 35.29       18344..18802    	 +	152	32265517	-	HH0018	-	conserved hypothetical protein	
19	 34.62       18792..20657    	 +	621	32265518	uvrC	HH0019	-	excinuclease ABC subunit C	
20	 30.56 -1    20820..22151    	 +	443	32265519	-	HH0020	-	hypothetical protein	
21	 31.98 -1    22148..23623    	 +	491	32265520	-	HH0021	-	two-component sensor histidine kinase family protein	
22	 35.11       23613..24287    	 +	224	32265521	-	HH0022	-	two-component response regulator family protein	
23	 39.06       24450..25742    	 +	430	32265522	rho	HH0023	-	transcription termination factor rho	
24	 39.25       25751..26494    	 +	247	32265523	murI	HH0024	-	glutamate racemase	
25	 34.70       26504..28696    	 -	730	32265524	-	HH0025	-	conserved hypothetical protein	
26	 39.82 +1    28808..30766    	 -	652	32265525	tktA	HH0026	-	transketolase	
27	 36.70       30801..33206    	 -	801	32265526	pheT	HH0027	-	phenylalanyl-tRNA synthetase beta subunit	
28	 37.03       33206..34207    	 -	333	32265527	pheS	HH0028	-	phenylalanyl-tRNA synthetase alpha subunit	
29	 36.84       34349..34690    	 +	113	32265528	-	HH0029	-	HIT hydrolase family protein	
30	 35.56       34762..35346    	 +	194	32265529	tehB	HH0030	-	conserved hypothetical protein	
31	 38.77       35415..36701    	 +	428	32265530	-	HH0031	-	conserved hypothetical membrane protein	
32	 25.57 -2    37157..37594    	 -	145	32265531	-	HH0032	-	conserved hypothetical membrane protein	
33	 35.20       37606..39801    	 -	731	32265532	feoB	HH0033	-	ferrous ion uptake system protein	
34	 38.00       39885..41126    	 -	413	32265533	-	HH0034	-	hypothetical protein	
35	 37.89       41136..41969    	 -	277	32265534	panC	HH0035	-	pantoate-beta-alanine ligase	
36	 36.47       42006..42707    	 -	233	32265535	pyrF	HH0036	-	Orotidine-5'-phosphate decarboxylase	
37	 38.61       42708..43181    	 -	157	32265536	nusB	HH0037	-	transcription termination factor NusB	
38	 39.49 +1    43192..43662    	 -	156	32265537	ribH	HH0038	-	riboflavin synthase beta-chain	
39	 38.62       43692..44504    	 -	270	32265538	kdsA	HH0039	-	3-deoxy-d-manno-octulosonic acid 8-phosphate synthetase	
40	 36.11       44515..45162    	 -	215	32265539	icfA	HH0040	-	carbonic anhydrase	
41	 33.48       45310..45990    	 +	226	32265540	-	HH0041	-	conserved hypothetical protein	
42	 35.85       46021..46497    	 -	158	32265541	yahD	HH0042	-	ankyrin repeat family protein	
43	 37.44       46498..47934    	 -	478	32265542	katA	HH0043	-	catalase	
44	 35.90       48104..48688    	 +	194	32265543	ribA	HH0044	-	GTP cyclohydrolase II	
45	 37.57       48725..49975    	 +	416	32265544	moeA_1	HH0045	-	molybdopterin biosynthesis enzyme	
46	 43.56 +2    50021..50245    	 +	74	32265545	moaD	HH0046	-	molybdopterin converting factor	
47	 38.40       50233..50706    	 +	157	32265546	moaE	HH0047	-	molybdopterin converting factor	
48	 35.28       50690..51253    	 +	187	32265547	mobB	HH0048	-	molybdopterin-guanine dinucleotide biosynthesis protein MobB	
49	 39.63 +1    51253..51792    	 +	179	32265548	mog	HH0049	-	molybdopterin biosynthesis enzyme MoaB	
50	 30.36 -1    51968..55228    	 +	1086	32265549	-	HH0050	-	hypothetical protein	
51	 38.28       55394..56263    	 -	289	32265550	-	HH0051	-	hypothetical protein	
52	 38.96       56477..56956    	 +	159	32265551	moaC	HH0052	-	Molybdenum cofactor biosynthesis enzyme MoaC	
53	 35.81       56957..58327    	 +	456	32265552	-	HH0053	-	conserved hypothetical protein	
54	 34.72       58324..59910    	 -	528	32265553	-	HH0054	-	conserved hypothetical protein	
55	 34.91       59970..60287    	 -	105	32265554	trxA_2	HH0055	-	thioredoxin	
56	 42.64 +1    60643..61803    	 +	386	32265555	hyaA	HH0056	-	Ni/Fe hydrogenases beta subunit	
57	 38.71       61814..63544    	 +	576	32265556	hyaB	HH0057	-	Ni/Fe hydrogenase alpha subunit	
58	 35.03       63555..64319    	 +	254	32265557	hyaC	HH0058	-	Ni/Fe hydrogenase cytochrome b subunit	
59	 37.78       64327..64866    	 +	179	32265558	hyaD	HH0059	-	Hydrogenase formation/expression protease HyaD/HupD	
60	 36.40       64863..66656    	 +	597	32265559	-	HH0060	-	hypothetical protein	
61	 36.06       66709..67479    	 +	256	32265560	-	HH0061	-	conserved hypothetical protein	
62	 39.41 +1    67490..68641    	 +	383	32265561	metB	HH0062	-	cystathionine gamma-synthase	
63	 38.22       68643..69584    	 +	313	32265562	cysK_1	HH0063	-	cysteine synthase	
64	 33.72       69562..70341    	 -	259	32265563	-	HH0064	-	conserved hypothetical protein	
65	 33.33       70335..70496    	 -	53	32265564	-	HH0065	-	hypothetical protein	
66	 36.08       70592..71065    	 +	157	32265565	-	HH0066	-	conserved hypothetical protein	
67	 36.78       71217..71825    	 +	202	32265566	-	HH0067	-	conserved hypothetical protein	
68	 35.64       71863..72771    	 -	302	32265567	-	HH0068	-	conserved hypothetical protein	
69	 37.95       72768..73244    	 -	158	32265568	-	HH0069	-	alpha-1,2-fucosyltransferase fragment	
70	 32.89       73214..73666    	 -	150	32265569	-	HH0070	-	alpha-1,2-fucosyltransferase fragment	
71	 43.53 +2    73683..74780    	 -	365	32265570	-	HH0071	-	conserved hypothetical protein	
72	 40.08 +1    74801..75763    	 -	320	32265571	-	HH0072	-	conserved hypothetical protein	
73	 35.90       75766..76854    	 -	362	32265572	-	HH0073	-	conserved hypothetical protein	
74	 30.17 -1    76926..77558    	 -	210	32265573	cfa	HH0074	-	conserved hypothetical protein	
75	 36.50       77551..78276    	 -	241	32265574	ygeA	HH0075	-	aspartate racemase	
76	 33.33       78397..79212    	 -	271	32265575	-	HH0076	-	conserved hypothetical protein	
77	 36.60       79209..79850    	 -	213	32265576	-	HH0077	-	conserved hypothetical protein	
78	 35.50       79823..80422    	 -	199	32265577	serB	HH0078	-	phosphoserine phosphatase	
79	 31.90 -1    80419..81888    	 -	489	32265578	-	HH0079	-	hypothetical protein	
80	 31.61 -1    81950..83107    	 -	385	32265579	-	HH0080	-	hypothetical protein	
81	 31.76 -1    83104..84057    	 -	317	32265580	-	HH0081	-	conserved hypothetical protein	
82	 35.41       84050..84868    	 -	272	32265581	-	HH0082	-	UDP-N-acetylglucosamine 2-epimerase	
83	 36.73       85287..86021    	 -	244	32265582	-	HH0083	-	conserved hypothetical protein	
84	 34.00       86018..87661    	 -	547	32265583	-	HH0084	-	conserved hypothetical protein	
85	 32.32       87674..87772    	 -	32	32265584	-	HH0085	-	conserved hypothetical protein fragment	
86	 37.46       87774..88088    	 -	104	32265585	-	HH0086	-	conserved hypothetical protein fragment	
87	 30.98 -1    88088..88342    	 -	84	32265586	-	HH0087	-	acyl carrier protein	
88	 33.16       88345..88917    	 -	190	32265587	-	HH0088	-	hypothetical protein	
89	 36.86       88914..89876    	 -	320	32265588	-	HH0089	-	conserved hypothetical protein	
90	 33.26       89982..91340    	 -	452	32265589	-	HH0090	-	conserved hypothetical protein	
91	 35.58       91340..92851    	 -	503	32265590	-	HH0091	-	hypothetical protein	
92	 36.73       92844..93578    	 -	244	32265591	-	HH0092	-	conserved hypothetical protein	
93	 32.65       93571..93864    	 -	97	32265592	-	HH0093	-	hypothetical protein	
94	 37.23       93865..94428    	 -	187	32265593	-	HH0094	-	hypothetical protein	
95	 40.43 +1    94428..94991    	 -	187	32265594	-	HH0095	-	conserved hypothetical protein	
96	 36.24       95258..95704    	 +	148	32265595	-	HH0096	-	conserved hypothetical protein	
97	 36.57       95714..96115    	 +	133	32265596	-	HH0097	-	conserved hypothetical protein	
98	 37.87       96474..97508    	 -	344	32265597	-	HH0098	-	possible molybdenum cofactor biosynthesis protein A	
99	 37.21       97587..98618    	 -	343	32265598	-	HH0099	-	dTDP-D-glucose 4,6-dehydratase	
100	 40.87 +1    98618..99493    	 -	291	32265599	-	HH0100	-	conserved hypothetical protein	

 
 35.80 MEAN 
 
 3.58  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.