IslandPath Analysis: Gloeobacter violaceus



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 0..4659019
4430 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 64.77       52..525      	 +	157	37519570	-	glr0001	-	hypothetical protein	
2	 63.96         595..927      	 +	110	37519571	-	glr0002	-	ArsR family transcriptional regulatory protein	
3	 67.77 +1      977..1792     	 +	271	37519572	-	glr0003	-	probable channel protein	
4	 62.59        1799..2215     	 +	138	37519573	-	glr0004	-	arsenate reductase ArsC homolog	
5	 60.55        2212..2898     	 +	228	37519574	-	glr0005	-	arsenical resistance protein ArsH homolog	
6	 60.85        2933..3379     	 +	148	37519575	-	glr0006	-	hypothetical protein	
7	 61.56        3492..3824     	 +	110	37519576	-	glr0007	-	ArsR family transcriptional regulatory protein	
8	 59.53        4005..5027     	 +	340	37519577	-	glr0008	-	phosphate ABC transporter periplasmic phosphate-binding protein	
9	 64.99        5096..6052     	 +	318	37519578	-	glr0009	-	phosphate ABC transporter permease protein	
10	 61.75        6052..6966     	 +	304	37519579	-	glr0010	-	phosphate ABC transporter permease protein	
11	 60.67        6960..7760     	 +	266	37519580	-	glr0011	-	phosphate ABC transporter ATP binding protein	
12	 60.45        7984..8997     	 +	337	37519581	-	glr0012	-	phosphate ABC transporter periplasmic phosphate-binding protein	
13	 60.47        9349..10380    	 +	343	37519582	-	glr0013	-	phosphate ABC transporter periplasmic phosphate-binding protein	
14	 58.63       10503..11510    	 +	335	37519583	-	glr0014	-	phosphate ABC transporter periplasmic phosphate-binding protein	
15	 60.87       11611..12627    	 +	338	37519584	-	glr0015	-	phosphate ABC transporter periplasmic phosphate-binding protein	
16	 64.69       12781..13944    	 +	387	37519585	-	glr0016	-	phosphate ABC transporter periplasmic phosphate-binding protein	
17	 58.91       14329..14934    	 +	201	37519586	-	glr0017	-	unknown protein	
18	 64.39       14939..15508    	 -	189	37519587	-	gll0018	-	hypothetical protein	
19	 66.16       15608..16990    	 -	460	37519588	-	gll0019	-	unknown protein	
20	 66.01       17120..18490    	 -	456	37519589	-	gll0020	-	unknown protein	
21	 62.65       18536..20353    	 -	605	37519590	-	gll0021	-	HlyB/MsbA family ABC transporter	
22	 63.53       20457..21125    	 -	222	37519591	-	gll0022	-	two-component response regulator	
23	 65.36       21151..22677    	 -	508	37519592	-	gll0023	-	two-component sensor histidine kinase	
24	 68.82 +1    23077..23634    	 +	185	37519593	-	glr0024	-	unknown protein	
25	 67.82 +1    23846..26275    	 -	809	37519594	-	gll0025	-	primosomal protein N'	
26	 68.09 +1    26350..26910    	 -	186	37519595	-	gll0026	-	hypothetical protein	
27	 66.20       26907..27989    	 -	360	37519596	-	gll0027	-	hypothetical protein	
28	 61.87       28214..28672    	 +	152	37519597	-	glr0028	-	hypothetical protein	
29	 60.37       28697..29236    	 +	179	37519598	-	glr0029	-	hypothetical protein	
30	 65.51       29214..29906    	 -	230	37519599	rpiA	gvip001	-	ribose 5-phosphate isomerase	
31	 59.49       29929..30165    	 -	78	37519600	-	gsl0031	-	unknown protein	
32	 58.46       30219..31022    	 -	267	37519601	-	gll0032	-	hypothetical protein	
33	 61.71       31169..33247    	 +	692	37519602	-	glr0033	-	two-component hybrid sensor and regulator	
34	 61.08       33259..35388    	 -	709	37519603	-	gll0034	-	similar to replicative DNA helicase	
35	 67.94 +1    35538..36401    	 +	287	37519604	-	glr0035	-	L-asparaginase	
36	 59.06       36493..37110    	 -	205	37519605	-	gll0036	-	hypothetical protein	
37	 65.41       37107..38303    	 -	398	37519606	-	gll0037	-	unknown protein	
38	 63.71       38379..38750    	 -	123	37519607	-	gll0038	-	hypothetical protein	
39	 65.06       38784..39467    	 -	227	37519608	-	gll0039	-	hypothetical protein	
40	 56.61 -1    39755..39943    	 +	62	37519609	-	gsr0040	-	hypothetical protein	
41	 66.62       40091..42412    	 +	773	37519610	recJ	gvip002	-	single-strand-DNA-specific exonuclease	
42	 61.29       42391..42669    	 -	92	37519611	-	gsl0042	-	hypothetical protein	
43	 63.27       43042..44337    	 +	431	37519612	purB	gvip003	-	adenylosuccinate lyase	
44	 63.75       44494..44904    	 -	136	37519613	-	gll0044	-	unknown protein	
45	 57.05 -1    45175..45621    	 +	148	37519614	-	glr0045	-	hypothetical protein	
46	 62.68       45641..47422    	 -	593	37519615	-	gll0046	-	unknown protein	
47	 61.49       47532..49289    	 -	585	37519616	-	gll0047	-	unknown protein	
48	 63.89       49484..49807    	 +	107	37519617	-	glr0048	-	hypothetical protein	
49	 59.88       49883..50044    	 -	53	37519618	-	gsl0049	-	hypothetical protein	
50	 63.08       50393..51367    	 +	324	37519619	-	glr0050	-	unknown protein	
51	 63.66       51413..52609    	 -	398	37519620	-	gll0051	-	Na+ ABC transporter permease protein	
52	 64.76       52606..53340    	 -	244	37519621	-	gll0052	-	Na+ ABC transporter ATP-binding protein	
53	 65.92       53346..54809    	 -	487	37519622	-	gll0053	-	hypothetical protein	
54	 64.52       54893..55915    	 -	340	37519623	-	gll0054	-	serine/threonine kinase	
55	 61.40       55984..57918    	 -	644	37519624	-	gll0055	-	two-component sensor histidine kinase	
56	 66.92 +1    57986..59155    	 +	389	37519625	-	glr0056	-	hypothetical protein	
57	 61.16       59206..59895    	 +	229	37519626	-	glr0057	-	unknown protein	
58	 63.38       60314..61408    	 +	364	37519627	-	glr0058	-	unknown protein	
59	 66.21       61425..62516    	 +	363	37519628	-	glr0059	-	unknown protein	
60	 64.64       62566..63699    	 +	377	37519629	-	glr0060	-	unknown protein	
61	 65.35       63740..64879    	 -	379	37519630	-	gll0061	-	unknown protein	
62	 66.81       64964..65668    	 -	234	37519631	-	gll0062	-	two-component response regulator	
63	 68.46 +1    65718..66386    	 -	222	37519632	-	gll0063	-	uracil phosphoribosyltransferase	
64	 58.56       66396..66827    	 -	143	37519633	-	gll0064	-	hypothetical protein	
65	 62.56       66796..67233    	 -	145	37519634	-	gll0065	-	unknown protein	
66	 66.05       67312..68277    	 -	321	37519635	-	gll0066	-	hypothetical protein	
67	 65.02       68283..69554    	 -	423	37519636	-	gll0067	-	carboxyl-terminal processing protease	
68	 64.10       69600..69989    	 -	129	37519637	-	gll0068	-	hypothetical protein	
69	 68.47 +1    70061..71170    	 -	369	37519638	proB	gvip004	-	glutamate 5-kinase	
70	 63.39       71182..71517    	 -	111	37519639	-	gll0070	-	hypothetical protein	
71	 66.67       71624..72922    	 +	432	37519640	hemL	gvip005	-	glutamate-1-semialdehyde 2,1-aminomutase	
72	 64.75       72977..73498    	 +	173	37519641	-	glr0072	-	lipoprotein signal peptidase	
73	 68.81 +1    73503..74435    	 +	310	37519642	-	glr0073	-	probable pseudouridine synthase	
74	 62.47       74440..75273    	 -	277	37519643	-	gll0074	-	unknown protein	
75	 55.04 -1    75452..76285    	 +	277	37519644	-	glr0075	-	sugar-non-specific nuclease NucA homolog	
76	 57.55       76474..76791    	 +	105	37519645	-	glr0076	-	putative transposase	
77	 51.67 -2    76791..77657    	 +	288	37519646	-	glr0077	-	putative transposase	
78	 62.79       78023..78409    	 +	128	37519647	-	glr0078	-	hypothetical protein	
79	 58.73       78478..79044    	 +	188	37519648	ycf4	gvip006	-	unknown protein	
80	 63.83       79162..82194    	 +	1010	37519649	-	glr0080	-	putative alpha-mannosidase	
81	 63.13       82256..82849    	 +	197	37519650	-	glr0081	-	hypothetical protein	
82	 61.88       82929..84077    	 -	382	37519651	-	gll0082	-	probable glycosyltransferase	
83	 61.69       84082..85326    	 -	414	37519652	-	gll0083	-	hypothetical protein	
84	 65.27       85344..86129    	 -	261	37519653	-	gll0084	-	hypothetical protein	
85	 66.05       86307..86954    	 +	215	37519654	rpl3	gvip007	-	50S ribosomal protein L3	
86	 63.71       86987..87628    	 +	213	37519655	rpl4	gvip008	-	50S ribosomal protein L4	
87	 59.08       87625..87927    	 +	100	37519656	rpl23	gvip009	-	50S ribosomal protein L23	
88	 63.54       88105..88680    	 +	191	37519657	-	glr0088	-	hypothetical protein	
89	 62.22       88677..89216    	 -	179	37519658	-	gll0089	-	unknown protein	
90	 59.87       89381..89851    	 +	156	37519659	-	glr0090	-	unknown protein	
91	 64.86       89856..90407    	 -	183	37519660	-	gll0091	-	hypothetical protein	
92	 65.42       90488..90808    	 +	106	37519661	-	glr0092	-	unknown protein	
93	 66.81       90820..92208    	 +	462	37519662	-	glr0093	-	aminopeptidase P	
94	 60.05       92607..94766    	 +	719	37519663	-	glr0094	-	unknown protein	
95	 56.67 -1    94907..95146    	 +	79	37519664	-	gsr0095	-	cell growth regulatory protein	
96	 53.27 -1    95140..95475    	 +	111	37519665	-	glr0096	-	cell growth regulatory protein	
97	 58.02       95612..96085    	 -	157	37519666	-	gll0097	-	unknown protein	
98	 60.50       96173..97906    	 +	577	37519667	-	glr0098	-	ABC transporter ATP-binding protein	
99	 67.73 +1    97911..100268   	 -	785	37519668	-	gll0099	-	two-component hybrid sensor and regulator	
100	 58.65      100300..101559   	 -	419	37519669	-	gll0100	-	unknown protein	

 
 62.08 MEAN 
 
 4.75  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.