IslandPath Analysis: Erwinia carotovora subsp. atroseptica SCRI1043



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.14   STD DEV: 5.41
Erwinia carotovora subsp. atroseptica SCRI1043, complete genome - 0..5064019
4472 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 49.10       32..475      	 -	147	50118966	mioC	ECA0001	-	putative flavoprotein (initiation of chromosome replication)	
2	 47.84         565..1026     	 -	153	50118967	asnC	ECA0002	-	AsnC-family transcriptional regulator	
3	 52.97        1179..2171     	 +	330	50118968	asnA	ECA0003	-	putative asparagine synthetase A	
4	 53.48        2168..3646     	 -	492	50118969	-	ECA0004	-	conserved hypothetical protein	
5	 52.47        3652..5151     	 -	499	50118970	-	ECA0005	-	conserved hypothetical protein	
6	 52.81        5629..7497     	 +	622	50118971	kup	ECA0006	-	potassium uptake protein	
7	 52.81        7668..9017     	 -	449	50118972	qseC	ECA0007	-	two-component system sensor kinase	
8	 54.75        9014..9676     	 -	220	50118973	qseB	ECA0008	-	two-component system response regulator.	
9	 48.23        9921..10316    	 +	131	50118974	-	ECA0009	-	putative exported protein	
10	 47.38       10521..10940    	 +	139	50118975	rbsD	ECA0010	-	high affinity ribose transport protein	
11	 52.06       10948..12453    	 +	501	50118976	rbsA	ECA0011	-	ribose transport ATP-binding protein	
12	 52.63       12461..13429    	 +	322	50118977	rbsC	ECA0012	-	ribose transport permease system protein	
13	 50.79       13455..14342    	 +	295	50118978	rbsB	ECA0013	-	ribose-binding periplasmic protein	
14	 52.21       14538..15464    	 +	308	50118979	rbsK	ECA0014	-	ribokinase	
15	 49.20       15468..16463    	 +	331	50118980	rbsR	ECA0015	-	ribose operon repressor	
16	 44.25 -1    22163..22684    	 -	173	50118981	mobB	ECA0016	-	molybdopterin-guanine dinucleotide biosynthesis protein B	
17	 46.87       22674..23264    	 -	196	50118982	mobA	ECA0017	-	molybdopterin-guanine dinucleotide biosynthesis protein A	
18	 41.85 -1    23466..23735    	 +	89	50118983	-	ECA0018	-	conserved hypothetical protein	
19	 47.29       23805..24800    	 +	331	50118984	-	ECA0019	-	conserved hypothetical protein	
20	 45.03 -1    24825..25448    	 +	207	50118985	dsbA	ECA0020	-	thiol:disulfide interchange protein	
21	 50.00       25826..28615    	 +	929	50118986	polA	ECA0021	-	putative DNA polymerase I	
22	 49.69       29034..29669    	 -	211	50118987	engB	ECA0022	-	probable GTP-binding protein	
23	 48.29       29873..30427    	 +	184	50118988	-	ECA0024	-	conserved hypothetical protein	
24	 50.22       30749..32122    	 +	457	50118989	hemN	ECA0026	-	oxygen-independent coproporphyrinogen III oxidase	
25	 55.20       32447..33859    	 -	470	50118990	glnG	ECA0027	-	nitrogen regulation two-component system, response regulator	
26	 53.90       33868..34917    	 -	349	50118991	glnL	ECA0028	-	nitrogen regulation two-component system, histidine kinase	
27	 51.91       35258..36667    	 -	469	50118992	glnA	ECA0029	-	glutamine synthetase	
28	 50.66       37037..38860    	 +	607	50118993	typA	ECA0030	-	GTP-binding regulatory protein	
29	 50.98       39022..39633    	 +	203	50118994	-	ECA0031	-	haloacid dehalogenase-like hydrolase	
30	 51.60       39698..40135    	 +	145	50118995	dtd	ECA0032	-	D-tyrosyl-tRNA(Tyr) deacylase	
31	 52.58       40213..41199    	 +	328	50118996	-	ECA0033	-	putative GNAT-family acetyltransferase	
32	 52.54       41509..43200    	 -	563	50118997	-	ECA0034	-	putative exported protein	
33	 54.28       43358..44746    	 -	462	50118998	-	ECA0035	-	putative purine permease	
34	 56.15       45107..47188    	 -	693	50118999	recG	ECA0036	-	putative ATP-dependent DNA helicase	
35	 53.68       47188..47880    	 -	230	50119000	trmH	ECA0037	-	putative tRNA (guanosine-2'-O)-methyltransferase	
36	 51.67       47886..49985    	 -	699	50119001	spoT	ECA0038	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	
37	 52.90       50004..50279    	 -	91	50119002	rpoZ	ECA0039	-	DNA-directed RNA polymerase omega chain	
38	 50.16       50333..50956    	 -	207	50119003	gmk	ECA0040	-	guanylate kinase	
39	 47.37       50958..51185    	 +	75	50119004	-	ECA0041	-	putative membrane protein	
40	 50.77       51400..53091    	 +	563	50119005	-	ECA0043	-	putative DNA ligase	
41	 46.38       53350..55035    	 +	561	50119006	-	ECA0044	-	putative membrane protein	
42	 41.71 -1    55765..56313    	 +	182	50119007	-	ECA0045	-	putative virulence-associated outer membrane protein	
43	 47.08       56357..57964    	 -	535	50119008	-	ECA0046	-	putative signaling membrane protein	
44	 54.92       58054..59253    	 -	399	50119009	-	ECA0047	-	putative exported protein	
45	 52.92       59530..61035    	 +	501	50119010	pitA	ECA0048	-	low-affinity inorganic phosphate transporter	
46	 47.62       61234..61569    	 -	111	50119011	uspB	ECA0049	-	putative universal stress protein B	
47	 47.26       62108..62545    	 +	145	50119012	uspA	ECA0050	-	universal stress protein A	
48	 56.40       62838..64181    	 +	447	50119013	gdhA	ECA0051	-	NADP-specific glutamate dehydrogenase	
49	 55.94       64337..65650    	 +	437	50119014	-	ECA0052	-	conserved hypothetcial protein	
50	 51.74       65657..67552    	 -	631	50119015	-	ECA0053	-	putative phosphodiesterase	
51	 58.10 +1    67694..68440    	 -	248	50119016	-	ECA0054	-	conserved hypothetical protein	
52	 56.58 +1    68437..70479    	 -	680	50119017	prlC	ECA0055	-	oligopeptidase A	
53	 55.10       70800..73349    	 +	849	50119018	-	ECA0056	-	putative TonB-dependent heme receptor	
54	 53.41       73530..74042    	 +	170	50119019	-	ECA0057	-	ECF-family RNA polymerase sigma factor	
55	 57.68 +1    74039..75028    	 +	329	50119020	-	ECA0058	-	transmembrane sensor	
56	 58.52 +1    75230..76051    	 +	273	50119021	-	ECA0059	-	TonB-like protein	
57	 56.46       76062..76355    	 -	97	50119022	-	ECA0060	-	conserved hypothetical protein	
58	 54.69       76671..77513    	 +	280	50119023	-	ECA0061	-	conserved hypothetical protein	
59	 54.77       77642..78994    	 +	450	50119024	gor	ECA0062	-	putative glutathione reductase	
60	 43.40 -1    79098..79385    	 -	95	50119025	-	ECA0063	-	conserved hypothetical protein	
61	 48.02       79382..79633    	 -	83	50119026	-	ECA0064	-	conserved hypothetical protein	
62	 56.18       79889..80794    	 +	301	50119027	-	ECA0065	-	conserved hypothetical protein	
63	 53.31       80829..81584    	 -	251	50119028	dsbG	ECA0066	-	thiol:disulfide interchange protein	
64	 54.33       81805..82428    	 +	207	50119029	-	ECA0067	-	putative LysE family transporter	
65	 54.30       82475..83347    	 -	290	50119030	-	ECA0068	-	LysR-family transcriptional regulator	
66	 48.24       83450..83959    	 +	169	50119031	padC	ECA0069	-	phenolic acid decarboxylase	
67	 58.05 +1    84016..85152    	 -	378	50119032	-	ECA0070	-	conserved hypothetical protein	
68	 59.52 +1    85149..86183    	 -	344	50119033	-	ECA0071	-	putative monooxygenase	
69	 58.07 +1    86185..87882    	 -	565	50119034	-	ECA0072	-	ABC transporter ATP-binding protein	
70	 59.00 +1    87879..88739    	 -	286	50119035	-	ECA0073	-	ABC transporter permease protein	
71	 57.78 +1    88736..89680    	 -	314	50119036	-	ECA0074	-	ABC transporter permease protein	
72	 54.52       89707..91344    	 -	545	50119037	-	ECA0075	-	ABC-type transporter, substrate binding protein	
73	 46.30       91666..92868    	 +	400	50119038	-	ECA0077	-	putative exported protein	
74	 54.97       92960..93925    	 -	321	50119039	tkrA	ECA0078	-	2-ketogluconate reductase	
75	 45.89       93967..94173    	 -	68	50119040	-	ECA0079	-	hypothetical protein	
76	 48.85       94276..96228    	 +	650	50119041	-	ECA0080	-	methyl-accepting chemotaxis protein	
77	 49.32       96284..96727    	 -	147	50119042	-	ECA0081	-	putative GNAT-family acetyltransferase	
78	 49.82       96724..97287    	 -	187	50119043	tag	ECA0082	-	DNA-3-methyladenine glycosylase I	
79	 59.01 +1    97589..98332    	 +	247	50119044	-	ECA0083	-	putative membrane protein	
80	 52.90       98527..99441    	 +	304	50119045	glyQ	ECA0084	-	glycine-tRNA synthetase, alpha subunit	
81	 54.64       99451..101520   	 +	689	50119046	glyS	ECA0085	-	glycine-tRNA synthetase, beta subunit	
82	 52.06      101812..102516   	 +	234	50119047	-	ECA0086	-	putative exported protein	
83	 52.46      102940..104847   	 +	635	50119048	mtlA	ECA0087	-	PTS system, mannitol-specific IIabc component	
84	 53.52      104909..106057   	 +	382	50119049	mtlD	ECA0088	-	mannitol-1-phosphate 5-dehydrogenase	
85	 53.57      106133..106735   	 +	200	50119050	mtlR	ECA0089	-	mannitol operon repressor	
86	 49.59      106894..107256   	 +	120	50119051	-	ECA0090	-	conserved hypothetical protein	
87	 48.55      107366..109258   	 -	630	50119052	-	ECA0091	-	methyl-accepting chemotaxis protein	
88	 49.44      109636..110262   	 -	208	50119053	sodA	ECA0092	-	manganese superoxide dismutase	
89	 54.56      110522..111355   	 -	277	50119054	fdhD	ECA0093	-	putative formate dehydrogenase formation protein	
90	 53.26      111626..113161   	 +	511	50119055	aldB	ECA0094	-	aldehyde dehydrogenase B	
91	 48.74      113351..114343   	 +	330	50119056	-	ECA0095	-	putative membrane protein	
92	 58.16 +1   114374..115831   	 -	485	50119057	xylB	ECA0096	-	xylulose kinase	
93	 53.33      115898..117217   	 -	439	50119058	xylA	ECA0097	-	putative D-xylose isomerase	
94	 46.35      117691..118689   	 +	332	50119059	xylF	ECA0098	-	D-xylose-binding periplasmic protein	
95	 53.18      118825..120366   	 +	513	50119060	xylG	ECA0099	-	D-xylose transport ATP-binding protein	
96	 56.26      120344..121525   	 +	393	50119061	xylH	ECA0100	-	xylose transport system permease	
97	 52.50      121662..122840   	 +	392	50119062	xylR	ECA0101	-	xylose operon regulatory protein	
98	 52.95      122910..123485   	 -	191	50119063	-	ECA0102	-	conserved hypothetical protein	
99	 45.54 -1   123731..123943   	 -	70	50119064	-	ECA0103	-	hypothetical protein	
100	 52.34      124086..125432   	 +	448	50119065	argG	ECA0104	-	argininosuccinate synthase	

 
 51.14 MEAN 
 
 5.41  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.