IslandPathversion 1.0

IslandPath Analysis: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.04 STD DEV: 5.68
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome - 0..3570858
3379 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 62.56      151..1464     	 +	437	46578418	dnaA-1	DVU0001	-	chromosomal replication initiator protein DnaA	
2	 59.48        1610..2764     	 +	384	46578419	dnaN	DVU0002	-	DNA polymerase III, beta subunit	
3	 63.04        2766..5162     	 +	798	46578420	gyrB	DVU0003	-	DNA gyrase, B subunit	
4	 63.01        5262..7832     	 +	856	46578421	gyrA	DVU0004	-	DNA gyrase, A subunit	
5	 64.63        7835..8620     	 +	261	46578422	-	DVU0005	-	lipoprotein, putative	
6	 62.37        8913..9377     	 -	154	46578423	-	DVU0006	-	universal stress protein family	
7	 62.27        9552..10937    	 -	461	46578424	asnS	DVU0007	-	asparaginyl-tRNA synthetase	
8	 42.86 -2    11095..11220    	 -	41	46578425	-	DVU0008	-	hypothetical protein	
9	 66.67       11681..12961    	 -	426	46578426	-	DVU0009	-	TRAP transporter, DctM subunit	
10	 65.26       12958..13524    	 -	188	46578427	-	DVU0010	-	TRAP transporter, DctQ subunit	
11	 62.96       13586..14611    	 -	341	46578428	-	DVU0011	-	TRAP transporter solute receptor DctP	
12	 64.67       15099..16301    	 +	400	46578429	-	DVU0012	-	hypothetical protein	
13	 64.12       16462..18270    	 +	602	46578430	-	DVU0013	-	sensory box histidine kinase	
14	 56.62       18470..18688    	 -	72	46578431	infA-1	DVU0014	-	translation initiation factor IF-1	
15	 62.37       18804..19595    	 -	263	46578432	lgt	DVU0015	-	prolipoprotein diacylglyceryl transferase	
16	 56.19 -1    19735..19839    	 +	34	46578433	-	DVU0016	-	hypothetical protein	
17	 53.67 -1    19976..20152    	 -	58	46578434	-	DVU0017	-	hypothetical protein	
18	 58.36       20136..22385    	 +	749	46578435	-	DVU0018	-	methyl-accepting chemotaxis protein, putative	
19	 58.95       22502..23110    	 -	202	46578436	ngr	DVU0019	-	nigerythrin	
20	 63.95       23221..23367    	 -	48	46578437	-	DVU0020	-	hypothetical protein	
21	 61.99       23612..24658    	 -	348	46578438	-	DVU0021	-	conserved domain protein	
22	 64.06       24857..27238    	 -	793	46578439	-	DVU0022	-	HAMP domain/GGDEF domain/EAL domain protein	
23	 53.54 -1    27228..27425    	 +	65	46578440	-	DVU0023	-	hypothetical protein	
24	 59.65       27468..27638    	 +	56	46578441	-	DVU0024	-	conserved hypothetical protein	
25	 64.44       27714..29873    	 -	719	46578442	-	DVU0025	-	sensory box histidine kinase	
26	 64.40       30487..31059    	 +	190	46578443	-	DVU0026	-	conserved hypothetical protein	
27	 63.93       31278..32702    	 -	474	46578444	-	DVU0027	-	membrane protein, putative	
28	 64.02       33232..33609    	 +	125	46578445	csaA	DVU0028	-	chaperone CsaA	
29	 68.88 +1    33986..35698    	 +	570	46578446	-	DVU0029	-	hydantoinase/oxoprolinase family protein	
30	 68.06 +1    36482..37984    	 -	500	46578447	-	DVU0030	-	transcriptional regulator, GntR family	
31	 69.65 +1    38435..39172    	 +	245	46578448	-	DVU0031	-	AzlC family protein	
32	 66.07       39162..39497    	 +	111	46578449	-	DVU0032	-	conserved hypothetical protein	
33	 66.34       39764..40378    	 +	204	46578450	-	DVU0033	-	isochorismatase family protein	
34	 63.36       40526..41311    	 +	261	46578451	-	DVU0034	-	DSBA-like thioredoxin domain protein	
35	 64.37       41700..41873    	 -	57	46578452	-	DVU0035	-	hypothetical protein	
36	 63.16       42287..42742    	 -	151	46578453	-	DVU0036	-	hypothetical protein	
37	 66.19       42924..43340    	 -	138	46578454	-	DVU0037	-	conserved hypothetical protein	
38	 68.99 +1    43678..45528    	 -	616	46578455	-	DVU0038	-	acyltransferase domain protein	
39	 66.48       45740..46270    	 +	176	46578456	-	DVU0039	-	C4-type zinc finger protein, DksA/TraR family	
40	 66.67       46450..47064    	 +	204	46578457	-	DVU0040	-	hypothetical protein	
41	 65.93       47257..49020    	 -	587	46578458	-	DVU0041	-	transglycosylase, SLT family	
42	 68.27 +1    49565..50314    	 +	249	46578459	-	DVU0042	-	RNA methyltransferase, TrmH family, group 3	
43	 54.81 -1    50554..50823    	 -	89	46578460	fliQ	DVU0043	-	flagellar biosynthetic protein FliQ	
44	 60.31       50840..51547    	 -	235	46578461	fliP	DVU0044	-	flagellar biosynthetic protein fliP	
45	 65.71       51576..52097    	 -	173	46578462	-	DVU0045	-	flagellar biosynthesis protein, FliO, putative	
46	 63.35       52090..52602    	 -	170	46578463	fliN	DVU0046	-	flagellar motor switch protein FliN	
47	 64.92       52628..53143    	 -	171	46578464	-	DVU0047	-	flagellar protein FliL	
48	 66.13       53164..53904    	 -	246	46578465	-	DVU0048	-	chemotaxis protein MotB	
49	 68.68 +1    53901..54995    	 -	364	46578466	-	DVU0049	-	OmpA family protein	
50	 65.61       55007..55765    	 -	252	46578467	motA-1	DVU0050	-	chemotaxis protein MotA	
51	 65.83       56041..56754    	 -	237	46578468	-	DVU0051	-	conserved hypothetical protein TIGR00044	
52	 63.65       56847..57773    	 -	308	46578469	era	DVU0052	-	GTP-binding protein Era	
53	 67.89 +1    58116..60077    	 +	653	46578470	-	DVU0053	-	sulfate permease, putative	
54	 67.46       60507..61766    	 +	419	46578471	-	DVU0054	-	dihydrouridine synthase family protein	
55	 65.75       61763..62635    	 +	290	46578472	ispH	DVU0055	-	hydroxymethylbutenyl pyrophosphate reductase	
56	 60.59       62676..63629    	 +	317	46578473	cheV-1	DVU0056	-	chemotaxis protein CheV	
57	 63.40       63889..64530    	 +	213	46578474	-	DVU0057	-	transcriptional regulator, TetR family	
58	 70.66 +1    64527..65678    	 +	383	46578475	-	DVU0058	-	efflux transporter, RND family, MFP subunit	
59	 67.45       65675..69385    	 +	1236	46578476	-	DVU0059	-	AcrB/AcrD/AcrF family protein	
60	 66.92       69540..70724    	 +	394	46578477	-	DVU0060	-	efflux transporter, RND family, MFP subunit	
61	 63.20       70740..73880    	 +	1046	46578478	-	DVU0061	-	multidrug resistance protein, putative	
62	 68.25 +1    73877..75391    	 +	504	46578479	-	DVU0062	-	RND efflux system, outer membrane protein, NodT family	
63	 63.04       75421..75861    	 +	146	46578480	-	DVU0063	-	transcriptional regulator, MarR family	
64	 64.03       75950..76858    	 +	302	46578481	-	DVU0064	-	hypothetical protein	
65	 68.67 +1    77110..77907    	 +	265	46578482	-	DVU0065	-	hypothetical protein	
66	 63.86       78122..78691    	 +	189	46578483	-	DVU0066	-	cytidine/deoxycytidylate deaminase domain protein	
67	 64.40       78862..79170    	 -	102	46578484	-	DVU0067	-	hypothetical protein	
68	 67.71       79547..81082    	 -	511	46578485	-	DVU0068	-	conserved hypothetical protein	
69	 70.28 +1    81263..85666    	 -	1467	46578486	-	DVU0069	-	hypothetical protein	
70	 70.21 +1    85666..87021    	 -	451	46578487	-	DVU0070	-	Ser/Thr protein phosphatase family protein	
71	 68.48 +1    87539..88699    	 +	386	46578488	dinP	DVU0071	-	DNA polymerase IV	
72	 61.92       89105..89884    	 +	259	46578489	-	DVU0072	-	glucose-1-phosphate cytidylyl-transferase	
73	 67.39       89894..91000    	 +	368	46578490	-	DVU0073	-	CDP-glucose-4,6-dehydratase, putative	
74	 68.24 +1    90988..91431    	 +	147	46578491	-	DVU0074	-	polysaccharide biosynthesis domain protein	
75	 67.46       91765..92898    	 +	377	46578492	-	DVU0075	-	aminotransferase, DegT/DnrJ/EryC1/StrS family	
76	 67.16       92949..93953    	 +	334	46578493	-	DVU0076	-	glycosyl transferase, group 2 family protein	
77	 67.41       94316..95398    	 +	360	46578494	-	DVU0077	-	conserved hypothetical protein	
78	 66.37       95445..95786    	 +	113	46578495	-	DVU0078	-	conserved hypothetical protein	
79	 66.54       96159..96962    	 +	267	46578496	-	DVU0079	-	ZIP zinc transporter family protein	
80	 66.38       97000..98406    	 +	468	46578497	fumC	DVU0080	-	fumarate hydratase, class II	
81	 64.82       98559..100289   	 -	576	46578498	-	DVU0081	-	sensory box histidine kinase/response regulator	
82	 67.11      100383..101975   	 -	530	46578499	-	DVU0082	-	conserved hypothetical protein	
83	 65.24      102105..102524   	 +	139	46578500	-	DVU0083	-	conserved hypothetical protein	
84	 65.91      102596..103648   	 -	350	46578501	-	DVU0084	-	translation initiation factor, aIF-2BI family, putative	
85	 63.45      104165..105409   	 +	414	46578502	trpB-1	DVU0085	-	tryptophan synthase, beta subunit	
86	 60.36      105446..105667   	 -	73	46578503	-	DVU0086	-	hypothetical protein	
87	 60.81      111902..112396   	 +	164	46578504	-	DVU0087	-	conserved domain protein	
88	 63.58      112393..113880   	 +	495	46578505	-	DVU0088	-	Sodium/pantothenate symporter	
89	 59.58      113936..114739   	 -	267	46578506	-	DVU0089	-	conserved hypothetical protein	
90	 62.86      115316..116287   	 +	323	46578507	wcaG	DVU0090	-	GDP-fucose synthetase	
91	 58.92      116340..117062   	 +	240	46578508	-	DVU0091	-	conserved hypothetical protein	
92	 64.68      117119..120436   	 -	1105	46578509	-	DVU0092	-	sensory box histidine kinase	
93	 64.63      120692..123142   	 -	816	46578510	-	DVU0093	-	conserved domain protein/glycosyl transferase, group 1 family protein	
94	 68.47 +1   123374..125536   	 +	720	46578511	-	DVU0094	-	methyl-accepting chemotaxis protein	
95	 61.75      125677..126714   	 -	345	46578512	-	DVU0095	-	polyamine ABC transporter, periplasmic polyamine-binding protein	
96	 63.82      126716..127489   	 -	257	46578513	potC	DVU0096	-	polyamine ABC transporter, permease protein	
97	 64.98      127492..128379   	 -	295	46578514	potB	DVU0097	-	polyamine ABC transporter, permease protein	
98	 63.78      128366..129472   	 -	368	46578515	potA	DVU0098	-	polyamine ABC transporter, ATP-binding protein	
99	 68.13 +1   129890..131050   	 -	386	46578516	-	DVU0099	-	TonB domain protein	
100	 63.13      131347..133296   	 +	649	46578517	-	DVU0100	-	TonB-dependent receptor	

 
 62.04 MEAN 
 
 5.68  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.