IslandPath Analysis: Desulfotalea psychrophila LSv54



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.83   STD DEV: 4.73
Desulfotalea psychrophila LSv54, complete genome - 0..3523383
3118 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 48.90       94..774      	 -	226	51243853	-	DP0001	-	related to methyltransferase	
2	 50.55         810..1634     	 +	274	51243854	-	DP0002	-	conserved hypothetical protein	
3	 48.59        1641..2564     	 -	307	51243855	-	DP0003	-	conserved hypothetical protein	
4	 45.35        2605..3453     	 -	282	51243856	-	DP0004	-	conserved hypothetical protein	
5	 50.06        3524..4294     	 -	256	51243857	-	DP0005	-	probable phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	
6	 44.90        4854..5579     	 -	241	51243858	-	DP0006	-	unknown protein	
7	 45.31        5662..7749     	 -	695	51243859	-	DP0007	-	probable translation elongation factor EF-G	
8	 38.04 -1     7906..8181     	 -	91	51243860	-	DP0008	-	unknown protein	
9	 48.30        8464..8610     	 +	48	51243861	-	DP0009	-	unknown protein	
10	 43.64        8650..8814     	 +	54	51243862	-	DP0010	-	unknown protein	
11	 46.04        8888..10249    	 +	453	51243863	-	DP0011	-	unknown protein	
12	 44.44       10618..10995    	 -	125	51243864	-	DP0012	-	conserved hypothetical protein	
13	 40.79 -1    11339..12304    	 +	321	51243865	-	DP0013	-	related to glycosyltransferase involved capsular polysaccharide biosynthesis	
14	 50.89       12672..14015    	 -	447	51243866	-	DP0014	-	probable UDP-glucose dehydrogenase	
15	 44.24       14205..14534    	 -	109	51243867	-	DP0015	-	hypothetical protein	
16	 44.99       14527..15324    	 -	265	51243868	-	DP0016	-	unknown protein	
17	 44.11       15364..17433    	 -	689	51243869	-	DP0017	-	probable O-antigen acetylase	
18	 38.54 -1    17641..18408    	 -	255	51243870	-	DP0018	-	hypothetical protein	
19	 37.50 -1    18556..19203    	 -	215	51243871	-	DP0019	-	related to maltose acetyltransferase	
20	 47.60       19350..20576    	 -	408	51243872	-	DP0020	-	unknown protein	
21	 42.75       20603..21016    	 +	137	51243873	-	DP0021	-	hypothetical protein	
22	 53.86 +1    21049..21915    	 -	288	51243874	-	DP0022	-	probable UTP-glucose-1-phosphate uridylyltransferase	
23	 52.57 +1    22263..23234    	 -	323	51243875	-	DP0023	-	probable GDP-L-fucose synthetase	
24	 40.62 -1    23902..24450    	 -	182	51243876	-	DP0024	-	conserved hypothetical protein	
25	 51.07       24849..25970    	 -	373	51243877	-	DP0025	-	probable GDP-mannose-4,6-dehydratase	
26	 50.24       26962..27990    	 +	342	51243878	-	DP0026	-	probable UDP-glucose 4-epimerase	
27	 54.22 +1    28135..28383    	 +	82	51243879	-	DP0027	-	unknown protein	
28	 50.17       28476..29657    	 -	393	51243880	-	DP0028	-	probable pilin glycosylation protein	
29	 48.31       29680..30300    	 -	206	51243881	-	DP0029	-	probable pilin glycosylation protein	
30	 46.57       30297..30893    	 -	198	51243882	-	DP0030	-	probable galactosyltransferase	
31	 49.02       30890..32017    	 -	375	51243883	-	DP0031	-	related to glycosyl transferase (WbpU)	
32	 44.88       32206..33348    	 -	380	51243884	-	DP0032	-	probable lipopolysaccharide biosynthesis protein (WbpT)	
33	 47.77       33362..35266    	 -	634	51243885	-	DP0033	-	probable asparagine synthetase (WbpS)	
34	 43.65       35717..35968    	 -	83	51243886	-	DP0034	-	probable transposase	
35	 48.81       36010..36345    	 -	111	51243887	-	DP0035	-	related to transposase	
36	 34.51 -2    36674..37183    	 -	169	51243888	-	DP0036	-	related to galactoside O-acetyltransferase	
37	 30.07 -2    37185..38348    	 -	387	51243889	-	DP0037	-	unknown protein	
38	 34.70 -2    38348..39298    	 -	316	51243890	-	DP0038	-	related to glycosyl transferase	
39	 44.85       39288..40832    	 -	514	51243891	-	DP0039	-	similar to O-antigen transporter	
40	 35.80 -2    40810..41337    	 -	175	51243892	-	DP0040	-	related to acetyltransferase	
41	 36.00 -2    41334..42308    	 -	324	51243893	-	DP0041	-	unknown protein	
42	 34.35 -2    42313..43002    	 -	229	51243894	-	DP0042	-	hypothetical protein	
43	 42.64       43005..44111    	 -	368	51243895	-	DP0043	-	probable cell wall biogenesis protein (WbpE)	
44	 49.09       44108..44989    	 -	293	51243896	-	DP0044	-	probable glucose-1-phosphate thymidylyltransferase	
45	 47.84       44989..46098    	 -	369	51243897	-	DP0045	-	probable dTDP-D-glucose-4,6-dehydratase	
46	 45.57       46064..47101    	 -	345	51243898	-	DP0046	-	probable lipopolysaccharide biosynthetic protein (WbpP)	
47	 45.43       47110..48390    	 -	426	51243899	-	DP0047	-	probable lipopolysaccharide biosynthesis protein (WbpO)	
48	 50.89       48436..50577    	 -	713	51243900	-	DP0048	-	related to lipopolysaccharide biosynthesis protein (WbpM)	
49	 38.63 -1    51227..51679    	 -	150	51243901	-	DP0049	-	conserved hypothetical protein	
50	 51.34       53139..54221    	 -	360	51243902	-	DP0050	-	unknown protein	
51	 46.41       55062..56384    	 -	440	51243903	-	DP0051	-	unknown protein	
52	 44.86       56886..58550    	 -	554	51243904	-	DP0052	-	unknown protein	
53	 51.54       58967..59845    	 +	292	51243905	-	DP0053	-	probable endonuclease IV	
54	 39.92 -1    59797..60054    	 +	85	51243906	-	DP0054	-	unknown protein	
55	 41.78 -1    60061..60285    	 -	74	51243907	-	DP0055	-	conserved hypothetical protein	
56	 40.38 -1    60312..60467    	 -	51	51243908	-	DP0056	-	hypothetical protein	
57	 29.86 -2    60451..60594    	 -	47	51243909	-	DP0057	-	unknown protein	
58	 54.80 +1    60668..61636    	 -	322	51243910	-	DP0058	-	probable D-alanyl-D-alanine ligase	
59	 52.21 +1    61651..63165    	 +	504	51243911	-	DP0059	-	probable glycolate oxidase subunit (GlcD)	
60	 44.44       63667..63909    	 +	80	51243912	-	DP0060	-	unknown protein	
61	 50.85       64310..66958    	 +	882	51243913	-	DP0061	-	related to poly(A) polymerase	
62	 49.84       67019..67654    	 +	211	51243914	-	DP0062	-	conserved hypothetical membrane protein	
63	 56.39 +2    68477..69352    	 +	291	51243915	-	DP0063	-	unknown protein	
64	 49.76       69678..71795    	 +	705	51243916	-	DP0064	-	related to anaerobic ribonucleoside-triphosphate reductase	
65	 50.40       71795..72415    	 +	206	51243917	pflA	DP0065	-	related to pyruvate formate-lyase activating enzyme	
66	 48.19       72941..74131    	 -	396	51243918	-	DP0066	-	related to long-chain fatty acid transport protein (FadL precursor)	
67	 48.01       74258..75988    	 -	576	51243919	-	DP0067	-	related to long-chain-fatty-acid--CoA ligase	
68	 47.60       76724..77662    	 -	312	51243920	-	DP0068	-	unknown protein	
69	 45.90       77947..78471    	 +	174	51243921	-	DP0069	-	unknown protein	
70	 47.39       78558..79382    	 +	274	51243922	-	DP0070	-	hypothetical protein	
71	 51.41       79395..80318    	 +	307	51243923	-	DP0071	-	related to 2-dehydropantoate 2-reductase	
72	 48.95       80828..81397    	 +	189	51243924	-	DP0072	-	hypothetical protein	
73	 49.66       81416..81856    	 +	146	51243925	-	DP0073	-	related to ADP-ribose pyrophosphatase	
74	 45.92       82079..83881    	 -	600	51243926	-	DP0074	-	probable GTP-binding protein TypA/BipA	
75	 45.87       84027..84377    	 +	116	51243927	-	DP0075	-	unknown protein	
76	 48.42       84570..85172    	 +	200	51243928	-	DP0076	-	unknown protein	
77	 51.71 +1    85530..86960    	 +	476	51243929	-	DP0077	-	conserved hypothetical protein	
78	 41.50 -1    87007..87594    	 -	195	51243930	-	DP0078	-	conserved hypothetical protein	
79	 47.98       87618..88259    	 -	213	51243931	-	DP0079	-	related arylesterase [Precursor]	
80	 48.98       88359..90128    	 +	589	51243932	-	DP0080	-	related to ABC transporter, multidrug resistance-like ATP-binding protein (MdlA)	
81	 50.69       90125..91933    	 +	602	51243933	-	DP0081	-	related to ABC transporter, ATP-binding protein	
82	 49.80       92471..92980    	 -	169	51243934	-	DP0082	-	related to NADH dehydrogenase/NAD(P)H nitroreductase	
83	 30.35 -2    93067..93267    	 +	66	51243935	-	DP0083	-	unknown protein	
84	 42.37       93304..93624    	 +	106	51243936	-	DP0084	-	unknown protein	
85	 53.17 +1    94234..95085    	 +	283	51243937	-	DP0085	-	related to D-alanine aminotransferase	
86	 49.45       95087..95719    	 +	210	51243938	-	DP0086	-	conserved hypothetical protein	
87	 48.07       95999..97525    	 +	508	51243939	-	DP0087	-	related to AAS bifunctional protein	
88	 46.67       97644..98453    	 +	269	51243940	-	DP0088	-	related to glutamine transport system permease protein (GlnP)	
89	 48.67       98469..99296    	 +	275	51243941	-	DP0089	-	similar to substrate-binding periplasmic protein (FliY)	
90	 49.00       99321..100220   	 +	299	51243942	-	DP0090	-	related to glutamine transport system permease protein (GlnP)	
91	 46.33      100247..101623   	 +	458	51243943	-	DP0091	-	hypothetical protein	
92	 40.63 -1   101672..102082   	 +	136	51243944	-	DP0092	-	conserved hypothetical protein	
93	 45.68      102207..102959   	 +	250	51243945	-	DP0093	-	related to histidinol-phosphatase	
94	 48.36      103204..105273   	 +	689	51243946	-	DP0094	-	related to periplasmic protein (AsmA)	
95	 46.09      105352..105798   	 -	148	51243947	-	DP0095	-	conserved hypothetical membrane protein	
96	 50.49      105860..106675   	 -	271	51243948	-	DP0096	-	probable GufA protein	
97	 48.60      106876..108198   	 -	440	51243949	-	DP0097	-	probable Na+/H+ antiporter	
98	 48.09      108327..108719   	 -	130	51243950	-	DP0098	-	unknown protein	
99	 44.94      109547..109882   	 -	111	51243951	-	DP0099	-	related to secretion protein SecG	
100	 47.75      109899..110654   	 -	251	51243952	-	DP0100	-	probable triosephosphate isomerase	

 
 46.83 MEAN 
 
 4.73  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.