IslandPathversion 1.0

IslandPath Analysis: Chromobacterium violaceum ATCC 12472



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.93 STD DEV: 6.18
Chromobacterium violaceum ATCC 12472, complete genome - 0..4751080
4407 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 64.10      245..1648     	 +	467	34495456	dnaA	CV0001	-	chromosomal replication iniciator protein DnaA	
2	 62.43        1691..2800     	 +	369	34495457	dnaN	CV0002	-	DNA-directed DNA polymerase, beta subunit	
3	 62.35        3006..5321     	 +	771	34495458	gyrB	CV0003	-	DNA gyrase subunit B	
4	 58.33 -1     5504..6547     	 -	347	34495459	-	CV0004	-	probable transposase	
5	 57.30 -1     7173..8069     	 +	298	34495460	-	CV0005	-	probable DNA methyltransferase	
6	 56.88 -1     8092..10104    	 +	670	34495461	-	CV0006	-	probable site-specific DNA-methyltransferase, cytosine-specific	
7	 58.62 -1    10106..12082    	 +	658	34495462	-	CV0007	-	conserved hypothetical protein	
8	 63.88       12493..13101    	 +	202	34495463	-	CV0008	-	hypothetical protein	
9	 65.67       13376..13777    	 +	133	34495464	-	CV0009	-	hypothetical protein	
10	 65.39       13847..14239    	 +	130	34495465	-	CV0010	-	hypothetical protein	
11	 40.51 -2    14392..14976    	 -	194	34495466	-	CV0011	-	hypothetical protein	
12	 42.56 -2    14973..16511    	 -	512	34495467	-	CV0012	-	conserved hypothetical protein	
13	 42.07 -2    16523..17014    	 -	163	34495468	-	CV0013	-	hypothetical protein	
14	 43.98 -2    17107..17604    	 -	165	34495469	-	CV0014	-	hypothetical protein	
15	 45.03 -2    17790..18704    	 -	304	34495470	-	CV0015	-	hypothetical protein	
16	 65.61       18704..21343    	 -	879	34495471	-	CV0016	-	probable vgr related protein	
17	 55.01 -1    21787..22515    	 +	242	34495472	-	CV0017	-	hypothetical protein	
18	 72.72 +1    22655..24619    	 -	654	34495473	-	CV0018	-	probable biotin carboxylase	
19	 69.91       24623..26227    	 -	534	34495474	-	CV0019	-	probable propionyl CoA carboxylase, beta subunit	
20	 71.10       26243..27460    	 -	405	34495475	-	CV0020	-	probable MFS transporter	
21	 65.35       27453..28664    	 -	403	34495476	-	CV0021	-	probable aminotransferase	
22	 61.39       28855..29328    	 +	157	34495477	-	CV0022	-	hypothetical protein	
23	 65.75       29474..32098    	 +	874	34495478	-	CV0023	-	probable vgr related protein	
24	 48.23 -2    32111..34252    	 +	713	34495479	-	CV0024	-	probable hydroxyethylthiazole kinase	
25	 31.80 -2    34255..34776    	 +	173	34495480	-	CV0025	-	hypothetical protein	
26	 37.04 -2    34819..34980    	 +	53	34495481	-	CV0026	-	hypothetical protein	
27	 35.03 -2    35224..35400    	 +	58	34495482	-	CV0027	-	hypothetical protein	
28	 63.14       35544..35798    	 -	84	34495483	-	CV0028	-	conserved hypothetical protein	
29	 66.27       35832..36329    	 +	165	34495484	-	CV0029	-	hypothetical protein	
30	 64.51       36413..37759    	 -	448	34495485	-	CV0030	-	hypothetical protein	
31	 69.84       37846..39828    	 -	660	34495486	tar	CV0031	-	methyl-accepting chemotaxis protein II	
32	 66.40       40046..40807    	 -	253	34495487	-	CV0032	-	probable MutT/nudix family protein	
33	 72.20 +1    40910..41722    	 +	270	34495488	-	CV0033	-	probable ribose-phosphate diphosphokinase	
34	 68.21       41773..43458    	 +	561	34495489	nadV	CV0034	-	nicotinamide phosphoribosyl transferase	
35	 68.60       43541..44005    	 +	154	34495490	-	CV0035	-	hypothetical protein	
36	 73.65 +1    44002..44445    	 +	147	34495491	-	CV0036	-	conserved hypothetical protein	
37	 69.70       44452..44880    	 -	142	34495492	-	CV0037	-	hypothetical protein	
38	 71.23 +1    44931..46025    	 -	364	34495493	-	CV0038	-	probable histidinol-phosphate aminotransferase	
39	 67.57       46117..46338    	 -	73	34495494	-	CV0039	-	hypothetical protein	
40	 65.09       46395..46712    	 +	105	34495495	cyaY	CV0040	-	CyaY protein	
41	 77.02 +1    46716..47507    	 -	263	34495496	-	CV0041	-	probable transmembrane protein	
42	 73.17 +1    47632..48492    	 +	286	34495497	-	CV0042	-	conserved hypothetical protein	
43	 73.42 +1    48462..49127    	 -	221	34495498	-	CV0043	-	conserved hypothetical protein	
44	 69.99       49237..50019    	 +	260	34495499	cysE	CV0044	-	serine O-acetyltransferase	
45	 65.48       50286..51128    	 +	280	34495500	-	CV0045	-	probable oxidoreductase iron/ascorbate family	
46	 69.97       51295..52839    	 +	514	34495501	pleD	CV0046	-	pleD gene product	
47	 72.18 +1    52836..53270    	 -	144	34495502	-	CV0047	-	probable transcriptional regulator, MarR family	
48	 69.43       53263..54783    	 -	506	34495503	-	CV0048	-	probable transport transmembrane protein	
49	 68.95       54989..55909    	 -	306	34495504	gcvA	CV0049	-	glycine cleavage activator protein	
50	 69.23       56272..57480    	 -	402	34495505	hemY	CV0050	-	protein porphyrin biosynthesis	
51	 69.46       57484..58521    	 -	345	34495506	hemX	CV0051	-	uroporphyrin-III C-methyltransferase	
52	 72.81 +1    58518..59249    	 -	243	34495507	hemD	CV0052	-	uroporphyrinogen-III synthase	
53	 72.32 +1    59246..59776    	 -	176	34495508	-	CV0053	-	conserved hypothetical protein	
54	 71.40 +1    59809..60696    	 -	295	34495509	hemC	CV0054	-	porphobilinogen deaminase	
55	 71.30 +1    60978..63674    	 +	898	34495510	ppc	CV0055	-	phosphoenolpyruvate carboxylase	
56	 66.83       63812..65059    	 -	415	34495511	-	CV0056	-	probable aminopeptidase	
57	 62.45       65154..66623    	 -	489	34495512	lasB	CV0057	-	class 4 metalloprotease	
58	 70.99       66623..66946    	 -	107	34495513	-	CV0058	-	hypothetical protein	
59	 68.38       67208..67849    	 -	213	34495514	pdxH	CV0059	-	pyridoxamine-phosphate oxidase	
60	 66.79       67950..68774    	 -	274	34495515	-	CV0060	-	probable endonuclease	
61	 72.44 +1    68920..69819    	 -	299	34495516	-	CV0061	-	probable transcriptional regulator, LysR family	
62	 72.06 +1    69913..70821    	 +	302	34495517	-	CV0062	-	probable transmembrane protein	
63	 67.91       70905..71711    	 -	268	34495518	-	CV0063	-	conserved hypothetical protein	
64	 69.89       71708..72172    	 -	154	34495519	-	CV0064	-	hypothetical protein	
65	 71.68 +1    72287..75019    	 -	910	34495520	-	CV0065	-	probable SWI/SNF family helicase	
66	 69.59       75121..76422    	 -	433	34495521	-	CV0066	-	hypothetical protein	
67	 67.84       76572..77849    	 -	425	34495522	hemL	CV0067	-	glutamate-1-semialdehyde 2,1-aminomutase	
68	 66.85       77933..80116    	 -	727	34495523	-	CV0068	-	probable colicin V secretion atp-binding protein	
69	 72.34 +1    80118..81368    	 -	416	34495524	-	CV0069	-	probable secretion protein	
70	 64.91       81588..81758    	 -	56	34495525	-	CV0070	-	hypothetical protein	
71	 54.80 -1    81884..82060    	 +	58	34495526	-	CV0071	-	hypothetical protein	
72	 63.06       82163..83548    	 +	461	34495527	-	CV0072	-	conserved hypothetical protein	
73	 69.71       83600..84913    	 -	437	34495528	pilR	CV0073	-	two-component system, regulatory protein	
74	 69.04       84906..86462    	 -	518	34495529	pilS	CV0074	-	two-component system sensor protein	
75	 68.66       86462..88813    	 -	783	34495530	parC	CV0075	-	DNA topoisomerase IV subunit A	
76	 69.50       88912..89370    	 +	152	34495531	-	CV0076	-	probable ElaA protein	
77	 54.71 -1    89443..92001    	 -	852	34495532	-	CV0077	-	probable TonB-dependent receptor	
78	 47.76 -2    92013..92213    	 +	66	34495533	-	CV0078	-	hypothetical protein	
79	 68.82       92405..93658    	 +	417	34495534	hemA	CV0079	-	glutamyl-tRNA reductase	
80	 66.02       93658..94734    	 +	358	34495535	prfA	CV0080	-	peptide chain release factor I	
81	 73.73 +1    94886..95494    	 -	202	34495536	-	CV0081	-	probable cytochrome c4	
82	 73.53 +1    95560..95967    	 -	135	34495537	-	CV0082	-	conserved hypothetical protein	
83	 72.96 +1    95977..96405    	 -	142	34495538	-	CV0083	-	conserved hypothetical protein	
84	 71.34 +1    96405..96725    	 -	106	34495539	-	CV0084	-	probable transcriptional regulator, ArsR family	
85	 66.95       96834..97190    	 +	118	34495540	-	CV0085	-	conserved hypothetical protein	
86	 67.31       97321..99189    	 +	622	34495541	-	CV0086	-	conserved hypothetical protein	
87	 69.12       99343..99993    	 +	216	34495542	-	CV0087	-	probable metallo-beta-lactamase	
88	 72.33 +1    99993..100310   	 +	105	34495543	-	CV0088	-	probable methylated-DNA-[protein]-cysteine S-methyltransferase	
89	 43.59 -2   100415..100570   	 -	51	34495544	-	CV0089	-	hypothetical protein	
90	 59.85      100557..101348   	 +	263	34495545	-	CV0090	-	probable sugar hydrolase	
91	 68.56      101435..102652   	 -	405	34495546	-	CV0091	-	probable two-component response regulator	
92	 66.13      103148..105022   	 +	624	34495547	-	CV0092	-	probable ribonuclease II	
93	 70.23      105298..106953   	 +	551	34495548	fadD1	CV0093	-	long chain fatty-acid CoA ligase	
94	 68.25      107234..108055   	 -	273	34495549	-	CV0094	-	conserved hypothetical protein	
95	 63.17      108255..109883   	 +	542	34495550	-	CV0095	-	probable methyl-accepting chemotaxis transducer	
96	 67.75      109984..110724   	 +	246	34495551	-	CV0096	-	hypothetical protein	
97	 63.02      110768..111589   	 -	273	34495552	-	CV0097	-	conserved hypothetical protein	
98	 69.93      111946..113292   	 -	448	34495553	-	CV0098	-	conserved hypothetical protein	
99	 67.61      113448..114821   	 -	457	34495554	pntB	CV0099	-	NAD(P) transhydrogenase, beta subunit	
100	 60.33      114824..115123   	 -	99	34495555	-	CV0100	-	probable transmembrane NAD(P) transhydrogenase transmembrane protein	

 
 64.93 MEAN 
 
 6.18  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.