IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.62 STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 0..1225935
1113 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 40.07        1..282      	 -	93	33241336	-	CpB0001	-	hypothetical protein	
2	 26.80 -2      417..569      	 +	50	33241337	-	CpB0002	-	hypothetical protein	
3	 38.56         573..878      	 +	101	33241338	-	CpB0003	-	glutamyl-tRNA (Gln) amidotransferase subunit C	
4	 44.15 +1      895..2373     	 +	492	33241339	-	CpB0004	-	glutamyl-tRNA (Gln) amidotransferase subunit A	
5	 43.08        2370..3836     	 +	488	33241340	-	CpB0005	-	glutamyl-tRNA (Gln) amidotransferase subunit B	
6	 41.10        4127..6895     	 +	922	33241341	-	CpB0006	-	outer membrane protein 6	
7	 51.28 +2     7138..7293     	 -	51	33241342	-	CpB0007	-	hypothetical protein	
8	 40.90        7605..10499    	 +	964	33241343	-	CpB0008	-	HB1 protein	
9	 44.00 +1    10864..11688    	 +	274	33241344	-	CpB0009	-	HB2 protein	
10	 41.21       11815..13122    	 +	435	33241345	-	CpB0010	-	HB3 protein	
11	 44.93 +1    13323..13598    	 +	91	33241346	-	CpB0011	-	HB2 protein	
12	 43.88 +1    13692..15749    	 +	685	33241347	-	CpB0012	-	HB2/HB5 protein	
13	 38.15       15892..16617    	 +	241	33241348	-	CpB0013	-	HB6 protein	
14	 38.36       16644..18215    	 +	523	33241349	-	CpB0014	-	HB7 protein	
15	 43.15       18563..20722    	 +	719	33241350	-	CpB0015	-	outer membrane protein 7	
16	 43.64       20653..21108    	 +	151	33241351	-	CpB0016	-	outer membrane protein 5	
17	 41.57       21391..21924    	 +	177	33241352	-	CpB0017	-	to outer membrane protein 5	
18	 42.43       21858..24176    	 +	772	33241353	-	CpB0018	-	outer membrane protein 5	
19	 43.07       24415..26190    	 +	591	33241354	-	CpB0019	-	outer membrane protein 5	
20	 44.41 +1    26108..27172    	 +	354	33241355	-	CpB0020	-	outer membrane protein 5	
21	 40.21       27317..27505    	 +	62	33241356	-	CpB0021	-	hypothetical protein	
22	 44.31 +1    27521..29005    	 +	494	33241357	-	CpB0022	-	outer membrane protein 11	
23	 42.83       29021..30358    	 +	445	33241358	-	CpB0023	-	outer membrane protein 5	
24	 43.03       30599..32713    	 -	704	33241359	-	CpB0024	-	putative outer membrane protein CT351	
25	 44.29 +1    32703..34409    	 -	568	33241360	-	CpB0025	-	putative outer membrane protein CT350	
26	 40.27       34391..34981    	 -	196	33241361	-	CpB0026	-	septum formation protein maf	
27	 41.18       35010..36614    	 -	534	33241362	-	CpB0027	-	putative ABC transporter protein ATPase	
28	 42.07       36657..37595    	 -	312	33241363	xerC	CpB0028	-	site-specific integrase/recombinase	
29	 43.18       37680..38603    	 -	307	33241364	-	CpB0029	-	putative sulphohydrolase/glycosulfatase	
30	 41.75       38758..39624    	 -	288	33241365	-	CpB0030	-	hypothetical protein	
31	 40.77       39774..42233    	 -	819	33241366	-	CpB0031	-	lon ATP-dependent proteinase	
32	 36.39 -1    42539..43324    	 -	261	33241367	-	CpB0032	-	hypothetical protein	
33	 37.40 -1    43386..43754    	 -	122	33241368	-	CpB0033	-	hypothetical protein	
34	 41.59       43890..44531    	 +	213	33241369	-	CpB0034	-	putative o-sialoglycoprotein endopeptidase	
35	 40.68       44710..44886    	 +	58	33241370	-	CpB0035	-	ribosomal protein S21	
36	 43.85 +1    44922..46100    	 +	392	33241371	-	CpB0036	-	heat shock protein dnaJ	
37	 45.16 +1    46137..48173    	 +	678	33241372	-	CpB0037	-	2-oxoisovalerate dehydrogenase alpha and beta subunit	
38	 41.57       48206..49456    	 -	416	33241373	-	CpB0038	-	hypothetical protein	
39	 43.92 +1    49565..51028    	 -	487	33241374	-	CpB0039	-	competence locus E-like protein	
40	 40.35       51001..51798    	 +	265	33241375	-	CpB0040	-	hypothetical protein	
41	 40.98       51791..52117    	 +	108	33241376	-	CpB0041	-	phosphotransferase system phosphohistidine-containing protein	
42	 42.89       52118..53833    	 +	571	33241377	-	CpB0042	-	phosphoenolpyruvate-protein phosphotransferase	
43	 41.92       53959..54249    	 -	96	33241378	-	CpB0043	-	hypothetical protein	
44	 40.71       54314..55642    	 -	442	33241379	-	CpB0044	-	DNA polymerase III (gamma and tau subunits) dnaX	
45	 43.26       55995..57344    	 +	449	33241380	-	CpB0045	-	HB2 protein	
46	 40.74       57402..58184    	 +	260	33241381	-	CpB0046	-	HB5 protein	
47	 42.53       58555..60762    	 +	735	33241382	-	CpB0047	-	HB3/HB4 fusion protein	
48	 33.33 -2    60951..61151    	 +	66	33241383	-	CpB0048	-	hypothetical protein	
49	 41.97       61183..63300    	 +	705	33241384	-	CpB0049	-	hypothetical protein	
50	 39.75       63310..63792    	 -	160	33241385	-	CpB0050	-	hypothetical protein	
51	 39.94       63992..64309    	 -	105	33241386	-	CpB0051	-	hypothetical protein	
52	 41.49       64329..64610    	 +	93	33241387	-	CpB0052	-	hypothetical protein	
53	 45.39 +1    64797..65501    	 -	234	33241388	-	CpB0053	-	hydroxymethylbilane synthase	
54	 43.83 +1    65479..66840    	 -	453	33241389	-	CpB0054	-	DNA repair protein sms	
55	 43.14       66806..67519    	 -	237	33241390	-	CpB0055	-	ribonuclease III	
56	 40.86       67625..68089    	 +	154	33241391	-	CpB0056	-	hypothetical protein	
57	 43.13       68449..70245    	 +	598	33241392	-	CpB0057	-	phosphomannomutase	
58	 39.90       70430..71053    	 +	207	33241393	-	CpB0058	-	manganese superoxide dismutase precursor	
59	 43.04       71135..72061    	 +	308	33241394	-	CpB0059	-	acetyl-CoA carboxylase carboxyltransferase beta chain	
60	 45.66 +1    72112..72549    	 +	145	33241395	-	CpB0060	-	deoxyuridine 5-triphosphate nucleotidohydrolase	
61	 41.72       72527..73027    	 +	166	33241396	fruA	CpB0061	-	PTS fructose-specific enzyme IIBC component	
62	 39.23       73030..73707    	 +	225	33241397	ptsN	CpB0062	-	phosphotransferase system enzyme II	
63	 40.98       73804..75189    	 +	461	33241398	mst101	CpB0063	-	sperm tail-specific-like protein	
64	 40.61       75468..75728    	 +	86	33241399	-	CpB0064	-	hypothetical protein	
65	 46.15 +1    75842..76075    	 +	77	33241400	-	CpB0065	-	hypothetical protein	
66	 41.44       76399..78150    	 +	583	33241401	-	CpB0066	-	hypothetical protein	
67	 42.85       78421..80154    	 +	577	33241402	-	CpB0067	-	hypothetical protein	
68	 39.31       80449..81552    	 +	367	33241403	-	CpB0068	-	hypothetical protein	
69	 36.11 -1    81824..82399    	 -	191	33241404	-	CpB0069	-	F25H5.5	
70	 43.38       83022..84584    	 +	520	33241405	-	CpB0070	-	hypothetical protein	
71	 36.00 -1    85090..85539    	 -	149	33241406	-	CpB0071	-	hypothetical protein	
72	 37.40 -1    85548..86579    	 -	343	33241407	-	CpB0072	-	hypothetical protein	
73	 42.79       86850..87071    	 +	73	33241408	-	CpB0073	-	translation initiation factor IF-1	
74	 43.12       87268..88452    	 +	394	33241409	-	CpB0074	-	translation elongation factor EF-Tu	
75	 32.54 -2    88596..88847    	 +	83	33241410	secE	CpB0075	-	SecE	
76	 38.07       88852..89400    	 +	182	33241411	nusG	CpB0076	-	transcription antitermination factor	
77	 38.26       89507..89932    	 +	141	33241412	-	CpB0077	-	ribosomal protein L11	
78	 38.63       89959..90657    	 +	232	33241413	-	CpB0078	-	ribosomal protein L1	
79	 40.35       90673..91185    	 +	170	33241414	-	CpB0079	-	ribosomal protein L10	
80	 38.72       91229..91618    	 +	129	33241415	-	CpB0080	-	ribosomal protein L7/L12	
81	 40.22       91755..95513    	 +	1252	33241416	-	CpB0081	-	DNA-directed RNA polymerase beta chain	
82	 40.44       95537..99718    	 +	1393	33241417	-	CpB0082	-	RNA polymerase beta	
83	 38.82       99827..100810   	 +	327	33241418	-	CpB0083	-	transaldolase	
84	 33.86 -2   100869..101249   	 +	126	33241419	-	CpB0084	-	putative predied ferredoxin	
85	 38.98      101258..102001   	 -	247	33241420	-	CpB0085	-	hypothetical protein	
86	 40.83      102399..103025   	 +	208	33241421	HrpE	CpB0086	-	HrpE	
87	 36.58 -1   103074..103874   	 +	266	33241422	-	CpB0087	-	hypothetical protein	
88	 42.00      103868..105643   	 +	591	33241423	-	CpB0088	-	H+-transporting ATP synthase alpha chain	
89	 40.09      105648..106964   	 +	438	33241424	-	CpB0089	-	H+-transporting ATPase chain B	
90	 40.76      107054..107578   	 +	174	33241425	-	CpB0090	-	H+-transporting  ATP synthase subunit D	
91	 39.69      107569..109551   	 +	660	33241426	ntpI	CpB0091	-	H+-transporting ATP synthase subunit I	
92	 43.66      109646..110071   	 +	141	33241427	-	CpB0092	-	Na+-ATPase complex 16K proteolipid chain	
93	 43.26      109950..110513   	 +	187	33241428	-	CpB0093	-	hypothetical protein	
94	 42.47      110647..113469   	 +	940	33241429	-	CpB0094	-	valyl-tRNA synthetase	
95	 40.62      113490..116288   	 +	932	33241430	pkn1	CpB0095	-	Pkn1	
96	 42.24      116329..121809   	 -	1826	33241431	-	CpB0096	-	excinuclease ABC chain A	
97	 42.61      122050..123504   	 +	484	33241432	-	CpB0097	-	pyruvate kinase	
98	 38.95      123598..124986   	 -	462	33241433	-	CpB0098	-	lipid A biosynthesis lauroyl acyltransferase	
99	 42.00      125039..125338   	 -	99	33241434	-	CpB0099	-	hypothetical protein	
100	 36.38 -1   125374..126651   	 -	425	33241435	-	CpB0100	-	hypothetical protein	

 
 40.62 MEAN 
 
 3.18  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.