IslandPath Analysis: Borrelia garinii Pbi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.23   STD DEV: 3.90
Borrelia garinii PBi chromosome linear, complete sequence - 0..904246
832 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 17.86      443..526      	 -	27	51598264	-	BG0001	-	hypothetical protein	
2	 27.35         629..1648     	 -	339	51598265	-	BG0002	-	beta-N-acetylhexosaminidase, putative	
3	 27.11        1636..3114     	 -	492	51598266	-	BG0003	-	hypothetical protein	
4	 27.46        3254..5041     	 +	595	51598267	femD	BG0004	-	phosphoglucomutase	
5	 31.70        5126..6163     	 -	345	51598268	trsA	BG0005	-	tryptophanyl-tRNA synthetase	
6	 28.19        6166..7254     	 -	362	51598269	-	BG0006	-	conserved hypothetical integral membrane protein	
7	 27.29        7308..8168     	 -	286	51598270	-	BG0007	-	hypothetical protein	
8	 27.63        8277..9047     	 +	256	51598271	-	BG0008	-	conserved hypothetical protein	
9	 24.88        9052..10056    	 +	334	51598272	-	BG0009	-	hypothetical protein	
10	 24.27 -1    10053..10427    	 +	124	51598273	-	BG0010	-	holo-acyl-carrier protein synthase, putative	
11	 28.21       10431..11270    	 +	279	51598274	-	BG0011	-	hypothetical protein	
12	 27.13       11271..12011    	 +	246	51598275	hisT	BG0012	-	pseudouridylate synthase I	
13	 23.35 -1    12004..12594    	 +	196	51598276	-	BG0013	-	hypothetical protein	
14	 25.62       12587..14569    	 +	660	51598277	priA	BG0014	-	primosomal protein N	
15	 30.60       14566..15186    	 -	206	51598278	udk	BG0015	-	uridine kinase	
16	 28.01       15186..15467    	 -	93	51598279	glpE	BG0016	-	glpE protein	
17	 29.09       15690..16655    	 +	321	51598280	-	BG0017	-	conserved hypothetical integral membrane protein	
18	 26.63       16652..17635    	 -	327	51598281	-	BG0018	-	conserved hypothetical protein	
19	 27.10       17637..18149    	 -	170	51598282	-	BG0019	-	hypothetical protein	
20	 31.60       18157..19827    	 -	556	51598283	pfpB	BG0020	-	pyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit	
21	 28.91       19905..20945    	 -	346	51598284	-	BG0021	-	S-adenosylmethionine: tRNA ribosyltransferase-isomerase	
22	 34.20 +1    20920..21963    	 -	347	51598285	ruvB	BG0022	-	Holliday junction DNA helicase	
23	 30.46       22008..22598    	 -	196	51598286	ruvA	BG0023	-	Holliday junction DNA helicase	
24	 29.12       22668..23807    	 +	379	51598287	-	BG0024	-	hypothetical protein	
25	 33.74 +1    23822..24553    	 -	243	51598288	-	BG0025	-	conserved hypothetical protein	
26	 30.57       24554..25459    	 -	301	51598289	folD	BG0026	-	methylenetetrahydrofolate dehydrogenase	
27	 29.89       25610..26248    	 +	212	51598290	-	BG0027	-	hypothetical protein	
28	 28.86       26256..27305    	 +	349	51598291	-	BG0028	-	lipoprotein, putative	
29	 19.68 -2    27291..27722    	 -	143	51598292	-	BG0029	-	conserved hypothetical protein	
30	 23.27 -1    27712..28347    	 -	211	51598293	lepB-1	BG0030	-	signal peptidase I	
31	 29.26       28349..29329    	 -	326	51598294	lepB-2	BG0031	-	signal peptidase I	
32	 23.84 -1    29400..30863    	 +	487	51598295	-	BG0032	-	hypothetical protein	
33	 23.84 -1    30875..31327    	 +	150	51598296	smpB	BG0033	-	small protein	
34	 33.90 +1    31401..31934    	 -	177	51598297	-	BG0034	-	hypothetical protein	
35	 27.22       32002..33882    	 -	626	51598298	parC	BG0035	-	DNA topoisomerase IV	
36	 29.89       33882..35681    	 -	599	51598299	parE	BG0036	-	DNA topoisomerase IV	
37	 28.73       35702..36439    	 -	245	51598300	plsC	BG0037	-	1-acyl-sn-glycerol-3-phosphate acyltransferase	
38	 25.28       36448..37986    	 -	512	51598301	-	BG0038	-	hypothetical protein	
39	 24.75       37998..39500    	 -	500	51598302	-	BG0039	-	hypothetical protein	
40	 25.00       39692..40543    	 +	283	51598303	cheR-1	BG0040	-	chemotaxis protein methyltransferase	
41	 26.93       40626..41297    	 -	223	51598304	phoU	BG0041	-	phosphate transport system regulatory protein	
42	 26.76       41308..42342    	 -	344	51598305	-	BG0042	-	hypothetical protein	
43	 21.14 -1    42339..42740    	 -	133	51598306	-	BG0043	-	hypothetical protein	
44	 25.25       42766..45213    	 -	815	51598307	-	BG0044	-	P115 protein	
45	 27.66       45306..45851    	 +	181	51598308	rnhB	BG0045	-	ribonuclease H	
46	 32.23 +1    45866..46228    	 -	120	51598309	-	BG0046	-	conserved hypothetical protein	
47	 30.83       46765..46884    	 -	39	51598310	-	BG0048	-	hypothetical protein	
48	 28.15       47007..47681    	 +	224	51598311	-	BG0049	-	conserved hypothetical integral membrane protein	
49	 24.06 -1    47758..48447    	 +	229	51598312	-	BG0050	-	conserved hypothetical integral membrane protein	
50	 29.68       48444..49100    	 -	218	51598313	spoU	BG0051	-	spoU protein	
51	 28.12       49183..49854    	 +	223	51598314	ung	BG0052	-	uracil DNA glycosylase	
52	 26.45       49952..50314    	 -	120	51598315	-	BG0053	-	hypothetical protein	
53	 33.73 +1    50330..51091    	 -	253	51598316	-	BG0054	-	triosephosphate isomerase	
54	 34.69 +1    51093..52274    	 -	393	51598317	pgk	BG0055	-	phosphoglycerate kinase	
55	 36.31 +2    52300..53307    	 -	335	51598318	gap	BG0056	-	glyceraldehyde 3-phosphate dehydrogenase	
56	 26.38       53382..55352    	 -	656	51598319	-	BG0057	-	hypothetical protein	
57	 30.51       55349..56128    	 -	259	51598320	tlyC	BG0058	-	hemolysin	
58	 24.84       56129..56587    	 -	152	51598321	-	BG0059	-	conserved hypothetical protein	
59	 30.23       56676..57029    	 -	117	51598322	trxA	BG0060	-	thioredoxin	
60	 26.92       57103..57819    	 +	238	51598323	-	BG0061	-	hypothetical protein	
61	 30.05       57871..58815    	 -	314	51598324	-	BG0062	-	hypothetical protein	
62	 31.12       58928..59875    	 -	315	51598325	fmt	BG0063	-	methionyl-tRNA formyltransferase	
63	 29.41       59872..60432    	 -	186	51598326	def	BG0064	-	polypeptide deformylase	
64	 25.62       60405..61091    	 -	228	51598327	-	BG0065	-	hypothetical protein	
65	 30.92       61088..62866    	 -	592	51598328	-	BG0066	-	peptidase, putative	
66	 27.38       62979..63869    	 +	296	51598329	-	BG0067	-	conserved hypothetical protein	
67	 29.86       63870..65108    	 +	412	51598330	-	BG0068	-	aminopeptidase II	
68	 33.77 +1    65123..65584    	 +	153	51598331	-	BG0069	-	conserved hypothetical protein	
69	 23.56 -1    65601..67073    	 +	490	51598332	-	BG0070	-	hypothetical protein	
70	 23.93 -1    67081..69399    	 +	772	51598333	-	BG0071	-	hypothetical protein	
71	 19.79 -2    69396..69956    	 +	186	51598334	-	BG0072	-	hypothetical protein	
72	 31.15       69997..71049    	 +	350	51598335	-	BG0073	-	peptide chain release factor 2	
73	 23.55 -1    71031..72440    	 +	469	51598336	-	BG0074	-	hypothetical protein	
74	 24.59       72477..73322    	 +	281	51598337	ftsY	BG0075	-	signal recognition particle-docking protein FtsY	
75	 22.45 -1    73319..74347    	 +	342	51598338	-	BG0076	-	hypothetical protein	
76	 22.17 -1    74348..75601    	 +	417	51598339	-	BG0077	-	hypothetical protein	
77	 26.73       75603..76283    	 +	226	51598340	-	BG0078	-	ABC transporter, ATP-binding protein	
78	 22.57 -1    76280..77533    	 +	417	51598341	-	BG0079	-	conserved hypothetical protein	
79	 25.48       77545..78843    	 -	432	51598342	-	BG0080	-	hypothetical protein	
80	 29.28       78836..79156    	 -	106	51598343	-	BG0081	-	hypothetical protein	
81	 26.08       79339..80607    	 +	422	51598344	nifS	BG0082	-	nifS protein	
82	 17.65 -2    80538..80690    	 -	50	51598345	-	BG0083	-	hypothetical protein	
83	 25.17       80811..81239    	 +	142	51598346	-	BG0084	-	hypothetical protein	
84	 31.80       81232..81492    	 -	86	51598347	-	BG0085	-	hypothetical protein	
85	 31.57       81551..82342    	 +	263	51598348	-	BG0086	-	conserved hypothetical protein	
86	 26.72       82379..82771    	 +	130	51598349	-	BG0087	-	conserved hypothetical protein	
87	 31.44       82801..83751    	 -	316	51598350	ldh	BG0088	-	L-lactate dehydrogenase	
88	 32.00       83874..85679    	 -	601	51598351	lepA	BG0089	-	GTP-binding membrane protein	
89	 26.04       85713..86699    	 -	328	51598352	-	BG0090	-	hypothetical protein	
90	 37.01 +2    86759..87193    	 -	144	51598353	-	BG0091	-	V-type ATPase, subunit K, putative	
91	 28.19       87210..89036    	 -	608	51598354	-	BG0092	-	V-type ATPase, subunit I, putative	
92	 27.47       89047..89643    	 -	198	51598355	atpD	BG0093	-	V-type ATPase, subunit D	
93	 35.40 +1    89646..90950    	 -	434	51598356	atpB	BG0094	-	V-type ATPase, subunit B	
94	 34.20 +1    90972..92699    	 -	575	51598357	atpA	BG0095	-	V-type ATPase, subunit A	
95	 24.73       92713..93258    	 -	181	51598358	-	BG0096	-	hypothetical protein	
96	 29.50       93268..93867    	 -	199	51598359	-	BG0097	-	V-type ATPase, subunit E, putative	
97	 27.65       94053..94439    	 -	128	51598360	-	BG0098	-	hypothetical protein	
98	 25.33       94445..96781    	 -	778	51598361	-	BG0099	-	DNA mismatch repair protein, putative	
99	 28.90       96771..97694    	 -	307	51598362	-	BG0100	-	conserved hypothetical protein	
100	 27.33       97691..98473    	 -	260	51598363	murI	BG0101	-	glutamate racemase	

 
 28.23 MEAN 
 
 3.90  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.