IslandPath Analysis: Bordetella bronchiseptica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.04   STD DEV: 4.24
Bordetella bronchiseptica RB50, complete genome - 0..5339179
4994 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 62.34        1..1920     	 +	639	33598994	gidA	BB0001	-	glucose inhibited division protein A	
2	 65.24        1917..2549     	 +	210	33598995	gidB	BB0002	-	glucose inhibited division protein B	
3	 62.16 -1     2546..3343     	 +	265	33598996	parA	BB0003	-	ParA family protein	
4	 68.15        3350..4156     	 +	268	33598997	-	BB0004	-	Putative acetyltransferase, GnaT family	
5	 67.76        4200..5117     	 +	305	33598998	parB	BB0005	-	probable chromosome partitioning protein ParB	
6	 71.36        5110..6111     	 +	333	33598999	ansB	BB0006	-	L-asparaginase II precursor	
7	 62.64 -1     6707..7897     	 +	396	33599000	tuf	BB0007	-	elongation factor Tu	
8	 58.79 -2     8136..8516     	 +	126	33599001	secE	BB0008	-	preprotein translocase SecE subunit	
9	 54.49 -2     8526..9059     	 +	177	33599002	nusG	BB0009	-	transcription antitermination protein NusG	
10	 63.43 -1     9123..9554     	 +	143	33599003	rplK	BB0010	-	50S ribosomal protein L11	
11	 64.52        9557..10255    	 +	232	33599004	rplA	BB0011	-	50S ribosomal protein L1	
12	 61.33 -1    10498..11022    	 +	174	33599005	rplJ	BB0012	-	50S ribosomal protein L10	
13	 62.76 -1    11104..11487    	 +	127	33599006	rplL	BB0013	-	50S ribosomal protein L7/L12	
14	 63.28 -1    11623..15759    	 +	1378	33599007	rpoB	BB0014	-	DNA-directed RNA polymerase beta chain	
15	 64.19       15759..20003    	 +	1414	33599008	rpoC	BB0015	-	DNA-directed RNA polymerase beta' chain	
16	 65.68       20112..20516    	 -	134	33599009	-	BB0016	-	putative lipoprotein	
17	 71.61       20757..21989    	 +	410	33599010	-	BB0017	-	putative membrane protein	
18	 68.41       22005..24350    	 -	781	33599011	-	BB0018	-	probable two-component sensor protein	
19	 68.20       24352..25458    	 -	368	33599012	-	BB0019	-	putative peptidoglycan binding protein	
20	 62.99 -1    25476..26210    	 -	244	33599013	-	BB0020	-	probable two-component response regulator	
21	 68.76       26468..27280    	 +	270	33599014	-	BB0021	-	Two-component response regulator	
22	 66.45       27310..28245    	 -	311	33599015	-	BB0022	-	putative metal transporter	
23	 63.77 -1    28251..28526    	 -	91	33599016	-	BB0023	-	conserved hypothetical protein	
24	 59.18 -2    29040..29480    	 +	146	33599017	rpsL	BB0024	-	30S ribosomal protein S12	
25	 60.08 -1    29644..30114    	 +	156	33599018	rpsG	BB0025	-	30S ribosomal protein S7	
26	 62.77 -1    30132..32234    	 +	700	33599019	fusA	BB0026	-	elongation factor G	
27	 62.64 -1    32311..33501    	 +	396	33599020	tuf	BB0027	-	elongation factor Tu	
28	 60.26 -1    33565..33876    	 +	103	33599021	rpsJ	BB0028	-	30S ribosomal protein S10	
29	 64.96       34222..34923    	 +	233	33599022	rplC	BB0029	-	50S ribosomal protein L3	
30	 61.49 -1    34928..35545    	 +	205	33599023	rplD	BB0030	-	50S ribosomal protein L4	
31	 56.57 -2    35542..35838    	 +	98	33599024	rplW	BB0031	-	50S ribosomal protein L23	
32	 64.86       35839..36666    	 +	275	33599025	rplB	BB0032	-	50S ribosomal protein L2	
33	 57.61 -2    36679..36954    	 +	91	33599026	rpsS	BB0033	-	30S ribosomal protein S19	
34	 57.27 -2    36958..37287    	 +	109	33599027	rplV	BB0034	-	50S ribosomal protein L22	
35	 63.38 -1    37297..38088    	 +	263	33599028	rpsC	BB0035	-	30S ribosomal protein S3	
36	 63.31 -1    38091..38507    	 +	138	33599029	rplP	BB0036	-	50S ribosomal protein L16	
37	 60.42 -1    38518..38709    	 +	63	33599030	rpmC	BB0037	-	50S ribosomal protein L29	
38	 57.80 -2    38711..38992    	 +	93	33599031	rpsQ	BB0038	-	30S ribosomal protein S17	
39	 68.87       39159..40022    	 -	287	33599032	-	BB0039	-	putative hydrolase	
40	 66.18       40109..41536    	 -	475	33599033	-	BB0040	-	putative aldehyde dehydrogenase	
41	 60.43 -1    42435..42803    	 +	122	33599034	rplN	BB0041	-	50S ribosomal protein L14	
42	 62.93 -1    42814..43134    	 +	106	33599035	rplX	BB0042	-	50S ribosomal protein L24	
43	 57.96 -2    43147..43686    	 +	179	33599036	rplE	BB0043	-	50S ribosomal protein L5	
44	 59.15 -2    43699..44004    	 +	101	33599037	rpsN	BB0044	-	30S ribosomal protein S14	
45	 61.11 -1    44015..44410    	 +	131	33599038	rpsH	BB0045	-	30S ribosomal protein S8	
46	 60.30 -1    44421..44954    	 +	177	33599039	rplF	BB0046	-	50S ribosomal protein L6	
47	 64.46       44976..45338    	 +	120	33599040	rplR	BB0047	-	50S ribosomal protein L18	
48	 62.10 -1    45354..45878    	 +	174	33599041	rpsE	BB0048	-	30S ribosomal protein S5	
49	 62.37 -1    45882..46067    	 +	61	33599042	rpmD	BB0049	-	50S ribosomal protein L30	
50	 65.99       46077..46517    	 +	146	33599043	rplO	BB0050	-	50S ribosomal protein L15	
51	 60.78 -1    46532..47857    	 +	441	33599044	secY	BB0051	-	preprotein translocase SecY subunit	
52	 54.79 -2    47867..48085    	 +	72	33599045	infA	BB0052	-	translation initiation factor IF-1	
53	 53.51 -2    48120..48233    	 +	37	33599046	rpmJ	BB0053	-	50S ribosomal protein l36	
54	 62.57 -1    48275..48640    	 +	121	33599047	rpsM	BB0054	-	30S ribosomal protein S13	
55	 63.68 -1    48656..49057    	 +	133	33599048	rpsK	BB0055	-	30S ribosomal protein S11	
56	 63.14 -1    49069..49692    	 +	207	33599049	rpsD	BB0056	-	30S ribosomal protein S4	
57	 63.53 -1    49907..50893    	 +	328	33599050	rpoA	BB0057	-	DNA-directed RNA polymerase alpha chain	
58	 61.87 -1    51052..51447    	 +	131	33599051	-	BB0058	-	50S ribosomal protein L17	
59	 63.47 -1    51576..52013    	 -	145	33599052	-	BB0059	-	histidine triad protein	
60	 61.70 -1    52120..52461    	 +	113	33599053	cutA	BB0060	-	putative periplasmic divalent cation tolerance protein	
61	 70.43       52472..54409    	 +	645	33599054	-	BB0061	-	thiol:disulfide interchange protein	
62	 69.46       54450..55487    	 +	345	33599055	-	BB0062	-	putative membrane protein	
63	 66.67       55484..56500    	 -	338	33599056	hemB	BB0063	-	putative delta-aminolevulinic acid dehydratase	
64	 64.74       56497..57120    	 -	207	33599057	-	BB0064	-	putative GTP-binding protein	
65	 66.10       57344..58045    	 +	233	33599058	-	BB0065	-	putative cytochrome C precursor	
66	 66.67       58164..60260    	 +	698	33599059	-	BB0066	-	putative membrane protein	
67	 66.82       60270..61604    	 +	444	33599060	-	BB0067	-	putative cytochrome c asssembly protein	
68	 68.99       61675..62964    	 -	429	33599061	lysA	BB0068	-	diaminopimelate decarboxylase	
69	 64.24       63178..63507    	 +	109	33599062	cyaY	BB0069	-	conserved hypothetical protein	
70	 66.54       63564..66008    	 -	814	33599063	-	BB0070	-	penicillin-binding protein 1A	
71	 66.04       66122..66757    	 +	211	33599064	aroK	BB0071	-	shikimate kinase I	
72	 69.82       66757..67833    	 +	358	33599065	aroB	BB0072	-	3-dehydroquinate synthase	
73	 67.19       67830..68984    	 +	384	33599066	-	BB0073	-	putative phosphohydrolase	
74	 69.24       69158..69817    	 -	219	33599067	-	BB0074	-	putative glutathione S-transferase	
75	 67.86       69874..72732    	 -	952	33599068	uvrA	BB0075	-	excinuclease ABC subunit A	
76	 72.83 +1    72888..74072    	 +	394	33599069	-	BB0076	-	putative transport protein	
77	 68.06       74305..74805    	 +	166	33599070	ssb	BB0077	-	single-strand binding protein	
78	 64.96       75038..77152    	 +	704	33599071	bfrC	BB0078	-	ferric siderophore receptor	
79	 69.25       77289..77792    	 +	167	33599072	-	BB0079	-	conserved hypothetical protein	
80	 66.28       77811..78590    	 +	259	33599073	-	BB0080	-	putative aldolase	
81	 70.30       78619..79635    	 +	338	33599074	-	BB0081	-	putative exported protein	
82	 65.79       79689..80483    	 +	264	33599075	-	BB0082	-	GntR family regulatory proteins	
83	 69.53       80480..81421    	 -	313	33599076	-	BB0083	-	transcriptional regulator	
84	 67.87       81701..83191    	 +	496	33599077	-	BB0084	-	putative chlorohydrolase	
85	 69.00       83230..84216    	 +	328	33599078	-	BB0085	-	putative exported protein	
86	 68.67       84369..85514    	 +	381	33599079	-	BB0086	-	putative glycosyl transferases	
87	 68.62       85521..86339    	 +	272	33599080	-	BB0087	-	hypothetical protein	
88	 67.70       86499..87470    	 +	323	33599081	-	BB0088	-	LysR family regulatory protein	
89	 69.06       87496..88497    	 +	333	33599082	-	BB0089	-	periplasmic solute-binding protein	
90	 63.29 -1    88561..89331    	 +	256	33599083	-	BB0090	-	ABC transport system permease protein	
91	 63.51 -1    89319..90110    	 +	263	33599084	-	BB0091	-	ABC transporter ATP-binding protein	
92	 68.19       90138..91454    	 +	438	33599085	-	BB0092	-	conserved hypothetical protein	
93	 62.43 -1    91591..91779    	 -	62	33599086	-	BB0093	-	putative exported protein	
94	 67.75       91788..92432    	 -	214	33599087	-	BB0094	-	TetR-family transcriptional regulator	
95	 68.96       92468..94645    	 -	725	33599088	glcB	BB0095	-	malate synthase G	
96	 67.45       94889..95653    	 +	254	33599089	glcC	BB0096	-	GntR-family transcriptional regulator	
97	 68.71       95650..96777    	 -	375	33599090	-	BB0097	-	putative dehydrogenase	
98	 68.73       97002..97388    	 -	128	33599091	-	BB0098	-	Putative exported protein	
99	 67.75       97654..98580    	 -	308	33599092	-	BB0099	-	UbiA prenyltransferase family protein	
100	 67.00       98667..99866    	 -	399	33599093	-	BB0100	-	putative aminotransferase	

 
 68.04 MEAN 
 
 4.24  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.