IslandPath Analysis: Bdellovibrio bacteriovorus



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.40   STD DEV: 3.19
Bdellovibrio bacteriovorus HD100, complete genome - 0..3782950
3587 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 48.45        1..1416     	 +	471	42521651	dnaA	Bd0001	-	chromosomal replication initiator protein dnaA	
2	 43.18 -2     1649..2755     	 +	368	42521652	dnaN	Bd0002	-	DNA polymerase III, beta subunit	
3	 47.02 -1     2755..3879     	 +	374	42521653	-	Bd0003	-	DNA repair and genetic recombination protein	
4	 48.04        3966..6386     	 +	806	42521654	-	Bd0004	-	DNA gyrase subunit B	
5	 50.72        6410..8893     	 +	827	42521655	gyrA	Bd0005	-	DNA gyrase subunit A	
6	 48.50        8895..9692     	 +	265	42521656	-	Bd0006	-	hypothetical protein predicted by Glimmer/Critica	
7	 43.04 -2     9692..9928     	 +	78	42521657	-	Bd0007	-	hypothetical protein predicted by Glimmer/Critica	
8	 44.54 -1     9925..10281    	 +	118	42521658	-	Bd0008	-	hypothetical protein predicted by Glimmer/Critica	
9	 48.12       10271..10960    	 +	229	42521659	atpB	Bd0009	-	ATP synthase F0, A subunit	
10	 45.60 -1    10993..11310    	 +	105	42521660	atpE/H	Bd0010	-	ATP synthase subunit C	
11	 47.84       11409..12332    	 -	307	42521661	-	Bd0011	-	hypothetical protein predicted by Glimmer/Critica	
12	 48.67       12474..12962    	 +	162	42521662	-	Bd0012	-	hypothetical protein predicted by Glimmer/Critica	
13	 46.83 -1    13006..13983    	 +	325	42521663	-	Bd0013	-	putative transcriptional regulator	
14	 50.29       14017..15384    	 -	455	42521664	pmm	Bd0014	-	pmm	
15	 51.10       15432..16382    	 -	316	42521665	pdxA	Bd0015	-	pyridoxal phosphate biosynthetic protein	
16	 48.27       16375..17298    	 -	307	42521666	surA	Bd0017	-	survival protein SurA precursor	
17	 50.57       17312..18280    	 -	322	42521667	ppiC	Bd0018	-	Parvulin-like peptidyl-prolyl isomerase	
18	 46.42 -1    18293..19102    	 -	269	42521668	ppiD	Bd0019	-	ppiD	
19	 49.85       19150..19815    	 -	221	42521669	-	Bd0020	-	putative lipoprotein	
20	 51.50       19818..20786    	 -	322	42521670	etfA	Bd0021	-	Electron transfer flavoprotein alpha-subunit	
21	 48.32       20797..21570    	 -	257	42521671	etfB	Bd0022	-	electron transfer flavoprotein beta-subunit	
22	 50.00       21751..22410    	 +	219	42521672	sdhC	Bd0024	-	putative cytochrome B subunit	
23	 53.00       22422..24338    	 +	638	42521673	sdhA	Bd0025	-	putative succinate dehydrogenase flavoprotein subunit	
24	 52.85       24349..25137    	 +	262	42521674	sdhB	Bd0026	-	succinate dehydrogenase subunit B	
25	 44.44 -1    25438..25689    	 +	83	42521675	-	Bd0027	-	hypothetical protein predicted by Glimmer/Critica	
26	 40.86 -2    25701..25793    	 +	30	42521676	-	Bd0028	-	hypothetical protein predicted by Glimmer/Critica	
27	 49.76       25900..27543    	 +	547	42521677	-	Bd0029	-	subtilase	
28	 50.40       27613..28497    	 -	294	42521678	pcbD	Bd0030	-	hydrolase, alpha/beta fold family	
29	 51.88       28509..29198    	 -	229	42521679	-	Bd0031	-	conserved hypothetical protein with FHA domain	
30	 42.92 -2    29347..29805    	 +	152	42521680	rpsF	Bd0032	-	30S ribosomal protein S6	
31	 48.93       29825..30715    	 +	296	42521681	-	Bd0033	-	conserved hypothetical protein	
32	 43.47 -2    30732..31175    	 +	147	42521682	rplI	Bd0034	-	50S ribosomal protein L9	
33	 49.89       31347..32222    	 +	291	42521683	-	Bd0035	-	Trypsin	
34	 52.45       32299..32502    	 -	67	42521684	-	Bd0036	-	hypothetical protein predicted by Glimmer/Critica	
35	 54.15 +1    32617..33543    	 -	308	42521685	-	Bd0037	-	putative oxidoreductase	
36	 51.06       33558..34973    	 -	471	42521686	dnaB	Bd0038	-	dnaB	
37	 40.33 -2    35076..35375    	 -	99	42521687	fis	Bd0039	-	site-specific DNA inversion stimulation factor	
38	 43.04 -2    35411..36049    	 -	212	42521688	-	Bd0040	-	radical activating enzyme	
39	 51.29       36142..38535    	 +	797	42521689	ftsK	Bd0041	-	cell division protein FtsK	
40	 44.33 -1    38608..39180    	 +	190	42521690	-	Bd0042	-	hypothetical protein predicted by Glimmer/Critica	
41	 48.21       39184..40050    	 +	288	42521691	-	Bd0043	-	hypothetical protein predicted by Glimmer/Critica	
42	 57.41 +2    40034..40249    	 +	71	42521692	-	Bd0044	-	hypothetical protein predicted by Glimmer/Critica	
43	 54.66 +1    40246..41103    	 +	285	42521693	dapF	Bd0045	-	dapF	
44	 50.45       41100..41981    	 +	293	42521694	dapA	Bd0046	-	dihydrodipicolinate synthase	
45	 50.58       41978..42667    	 +	229	42521695	dapB	Bd0047	-	dapB	
46	 52.55       42664..43173    	 +	169	42521696	-	Bd0048	-	hypothetical protein predicted by Glimmer/Critica	
47	 46.91 -1    43235..43882    	 +	215	42521697	talC	Bd0049	-	talC	
48	 52.03       43882..44325    	 +	147	42521698	-	Bd0050	-	hypothetical protein predicted by Glimmer/Critica	
49	 51.82       44375..46489    	 +	704	42521699	-	Bd0051	-	hypothetical protein predicted by Glimmer/Critica	
50	 52.35       46473..47729    	 -	418	42521700	murD	Bd0052	-	murD	
51	 49.86       47846..49267    	 +	473	42521701	-	Bd0054	-	hypothetical protein	
52	 41.03 -2    49361..49555    	 +	64	42521702	-	Bd0055	-	hypothetical protein predicted by Glimmer/Critica	
53	 53.85 +1    49662..50582    	 +	306	42521703	-	Bd0056	-	conserved hypothetical protein	
54	 53.19       50579..52633    	 -	684	42521704	lig	Bd0057	-	DNA ligase	
55	 50.35       52687..52968    	 +	93	42521705	gatC	Bd0058	-	glutamyl-tRNA(Gln) amidotransferase (subunit C)	
56	 53.02       52978..54450    	 +	490	42521706	gatA	Bd0059	-	glutamyl-tRNA(Gln) amidotransferase, A subunit	
57	 50.21       54440..55873    	 +	477	42521707	gatB	Bd0060	-	glutamyl-tRNA(Gln) amidotransferase, B subunit	
58	 51.37       55889..56803    	 +	304	42521708	-	Bd0061	-	unnamed protein product	
59	 47.42       56811..57236    	 +	141	42521709	-	Bd0062	-	conserved hypothetical protein	
60	 53.33       57326..58705    	 +	459	42521710	-	Bd0063	-	conserved hypothetical protein	
61	 50.68       58773..59141    	 -	122	42521711	-	Bd0064	-	hypothetical protein predicted by Glimmer/Critica	
62	 51.55       59532..61277    	 +	581	42521712	rho	Bd0065	-	transcription termination factor Rho	
63	 51.30       61343..61804    	 -	153	42521713	-	Bd0067	-	conserved hypothetical protein	
64	 38.62 -2    62139..62384    	 +	81	42521714	rpmE	Bd0068	-	50S ribosomal protein L31	
65	 50.65       62532..63605    	 +	357	42521715	prfA	Bd0069	-	peptide chain release factor RF-1	
66	 50.11       63609..64490    	 +	293	42521716	hemK	Bd0070	-	HemK protein	
67	 53.41       64492..65736    	 +	414	42521717	murA	Bd0071	-	UDP-N-acetylglucosamine enolpyruvyl transferase	
68	 51.07       65780..66574    	 -	264	42521718	-	Bd0072	-	hypothetical protein predicted by Glimmer/Critica	
69	 49.50       66708..67610    	 -	300	42521719	-	Bd0073	-	polysaccharide deacetylase-related protein	
70	 46.37 -1    67752..68150    	 -	132	42521720	-	Bd0074	-	hypothetical protein predicted by Glimmer/Critica	
71	 52.04       68363..71308    	 +	981	42521721	-	Bd0075	-	conserved hypothetical protein with TPR-domain	
72	 49.51       71336..71644    	 +	102	42521722	-	Bd0076	-	hypothetical protein predicted by Glimmer/Critica	
73	 50.15       71677..72972    	 +	431	42521723	serS	Bd0077	-	serS	
74	 48.95       73283..74095    	 +	270	42521724	-	Bd0078	-	hypothetical protein predicted by Glimmer/Critica	
75	 48.89       74102..74776    	 +	224	42521725	dedA	Bd0080	-	DedA protein	
76	 48.26       74777..76726    	 -	649	42521726	cyaB	Bd0081	-	adenylate cyclase, putative	
77	 52.92       76710..78767    	 -	685	42521727	-	Bd0082	-	hypothetical protein predicted by Glimmer/Critica	
78	 45.43 -1    78886..79290    	 +	134	42521728	-	Bd0083	-	conserved hypothetical protein	
79	 49.38       79300..80421    	 +	373	42521729	-	Bd0084	-	hypothetical protein predicted by Glimmer/Critica	
80	 48.72       80485..80952    	 +	155	42521730	-	Bd0085	-	cytidine/deoxycytidylate deaminase family protein	
81	 51.08       80969..83047    	 +	692	42521731	-	Bd0086	-	hypothetical protein predicted by Glimmer/Critica	
82	 46.98 -1    83103..83615    	 +	170	42521732	-	Bd0087	-	GTP cyclohydrolase I	
83	 46.15 -1    83846..84274    	 +	142	42521733	-	Bd0088	-	hypothetical protein predicted by Glimmer/Critica	
84	 51.34       84356..85216    	 +	286	42521734	-	Bd0089	-	hypothetical protein predicted by Glimmer/Critica	
85	 48.72       85438..85905    	 +	155	42521735	-	Bd0090	-	hypothetical protein predicted by Glimmer/Critica	
86	 42.64 -2    86377..86634    	 -	85	42521736	-	Bd0091	-	conserved hypothetical protein	
87	 48.87       86828..87535    	 +	235	42521737	-	Bd0092	-	putative cytochrome b	
88	 49.03       87560..88075    	 +	171	42521738	-	Bd0093	-	conserved hypothetical protein	
89	 52.85       88127..88582    	 +	151	42521739	-	Bd0094	-	hypothetical protein predicted by Glimmer/Critica	
90	 48.97       88821..89933    	 +	370	42521740	-	Bd0095	-	hypothetical protein predicted by Glimmer/Critica	
91	 51.72       89941..90636    	 +	231	42521741	-	Bd0096	-	hypothetical protein predicted by Glimmer/Critica	
92	 45.21 -1    90797..91099    	 +	100	42521742	groES	Bd0097	-	chaperonin groES	
93	 46.68 -1    91156..92796    	 +	546	42521743	groEL	Bd0099	-	60 KDA chaperonin	
94	 51.10       92858..94444    	 -	528	42521744	-	Bd0100	-	hypothetical protein	
95	 52.45       94522..95703    	 +	393	42521745	-	Bd0101	-	conserved hypothetical protein	
96	 48.35       95746..96138    	 +	130	42521746	cheY	Bd0102	-	chemotaxis response regulator	
97	 49.81       96125..96385    	 +	86	42521747	-	Bd0103	-	hypothetical protein predicted by Glimmer/Critica	
98	 57.19 +2    96873..97178    	 -	101	42521748	-	Bd0108	-	hit locus orf4	
99	 48.76       97194..98846    	 -	550	42521749	-	Bd0109	-	similar to cell wall-associated protein precursor wapA	
100	 49.32       98877..99752    	 -	291	42521750	TadB	Bd0110	-	TadB	

 
 50.40 MEAN 
 
 3.19  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.