IslandPath Analysis: Bacillus thuringiensis serovar konkukian



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.52   STD DEV: 3.51
Bacillus thuringiensis serovar konkukian str. 97-27, complete genome - 0..5237682
5117 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 35.42      409..1749     	 +	446	49479264	dnaA	BT9727_0001	-	chromosomal replication initiator protein	
2	 32.28        1928..3067     	 +	379	49476685	dnaN	BT9727_0002	-	DNA polymerase III, beta subunit	
3	 35.11        3183..3407     	 +	74	49479933	-	BT9727_0003	-	conserved hypothetical protein	
4	 34.49        3420..4547     	 +	375	49477032	recF	BT9727_0004	-	DNA replication and repair protein	
5	 37.03        4586..6508     	 +	640	49476686	gyrB	BT9727_0005	-	DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B)	
6	 36.53        6597..9068     	 +	823	49476687	gyrA	BT9727_0006	-	DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)	
7	 34.33       14358..15359    	 -	333	49476688	-	BT9727_0008	-	conserved hypothetical protein	
8	 39.00       15475..16938    	 +	487	49476689	guaB	BT9727_0009	-	IMP dehydrogenase (inositol-monophosphate dehydrogenase)	
9	 35.46       17043..18359    	 +	438	49478184	dacA	BT9727_0010	-	serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase)	
10	 42.91 +2    18521..19408    	 +	295	49476690	pdx1	BT9727_0011	-	4-hydroxythreonine-4-phosphate dehydrogenase (pyridoxine biosynthesis protein)	
11	 40.44 +1    19427..20017    	 +	196	49479020	guaA	BT9727_0012	-	GMP synthase, glutamine-hydrolyzing (glutamine amidotransferase)	
12	 38.43       20345..21619    	 +	424	49478185	serS	BT9727_0013	-	serine--tRNA ligase (seryl-tRNA synthetase)	
13	 34.42       21876..22427    	 +	183	49476691	-	BT9727_0014	-	hypothetical protein	
14	 36.02       22463..23131    	 -	222	49476692	dck	BT9727_0015	-	deoxynucleoside kinase	
15	 34.59       23134..23769    	 -	211	49476693	dgk	BT9727_0016	-	deoxyguanosine kinase	
16	 30.93 -1    23895..24434    	 -	179	49479021	pncA	BT9727_0017	-	nicotinamidase (pyrazinamidase)	
17	 36.93       24542..25042    	 +	166	49481561	-	BT9727_0018	-	probable cytidine/deoxycytidylate deaminase family protein	
18	 39.31 +1    25519..27207    	 +	562	49476694	dnaX	BT9727_0019	-	DNA polymerase III, gamma and tau subunits	
19	 36.97       27230..27559    	 +	109	49476695	-	BT9727_0020	-	conserved hypothetical protein	
20	 39.36 +1    27574..28170    	 +	198	49478186	recR	BT9727_0021	-	recombination protein	
21	 32.88       28185..28406    	 +	73	49476696	-	BT9727_0022	-	conserved hypothetical protein	
22	 31.48 -1    28622..28891    	 +	89	49479331	bofA	BT9727_0023	-	sigma-K factor processing regulatory protein	
23	 34.88       34566..35987    	 +	473	49480016	cad	BT9727_0025	-	lysine decarboxylase	
24	 36.20       35989..36615    	 +	208	49480017	tmk	BT9727_0026	-	thymidylate kinase	
25	 37.09       36651..37634    	 +	327	49480023	holB	BT9727_0027	-	DNA polymerase III, delta prime subunit	
26	 36.32       37631..38467    	 +	278	49481560	-	BT9727_0028	-	signal peptidase-like protein	
27	 33.06       38467..38832    	 +	121	49479031	-	BT9727_0029	-	conserved hypothetical protein	
28	 34.28       38953..39693    	 +	246	49479032	-	BT9727_0030	-	conserved hypothetical protein, possible methyltransferase	
29	 34.36       39680..39970    	 +	96	49476697	-	BT9727_0031	-	conserved hypothetical protein	
30	 34.82       39939..40814    	 +	291	49481556	-	BT9727_0032	-	uroporphyrin-III C-methyltransferase	
31	 34.04       40835..41119    	 -	94	49479324	-	BT9727_0033	-	transition state transcriptional regulatory protein	
32	 36.21       41610..43592    	 +	660	49477589	metS	BT9727_0034	-	methionine--tRNA ligase (methionyl-tRNA synthetase)	
33	 37.63       43758..44525    	 +	255	49477127	tatD	BT9727_0035	-	TatD related DNase	
34	 37.63       44740..45297    	 +	185	49479932	rnmV	BT9727_0036	-	ribonuclease M5	
35	 36.06       45294..46172    	 +	292	49477600	ksgA	BT9727_0037	-	dimethyladenosine transferase	
36	 37.38       46283..47146    	 +	287	49480336	-	BT9727_0038	-	conserved hypothetical protein, possible sporulation-specific protease	
37	 36.78       47385..47645    	 +	86	49478532	veg	BT9727_0039	-	veg protein	
38	 38.34       48104..48982    	 +	292	49479996	ispE	BT9727_0040	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase (CMK)	
39	 37.22       49037..49885    	 +	282	49479993	purR	BT9727_0041	-	purine operon transcription repressor	
40	 35.20       50008..50382    	 +	124	49479991	purR	BT9727_0042	-	pur operon repressor	
41	 39.08 +1    50481..50828    	 +	115	49476698	spoVG	BT9727_0043	-	stage V sporulation protein G	
42	 38.26       51153..52532    	 +	459	49476699	gcaD	BT9727_0044	-	UDP-N-acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1-phosphate uridyltransferase)	
43	 37.11       52551..53504    	 +	317	49477325	prs	BT9727_0045	-	ribose-phosphate diphosphokinase (ribose-phosphate pyrophosphokinase) (RPPK) (Phosphoribosyl pyrophosphate synthetase)	
44	 34.76       53577..54137    	 +	186	49481760	spoVC	BT9727_0046	-	aminoacyl-tRNA hydrolase (peptidyl-tRNA hydrolase);stage V sporulation protein C	
45	 32.89       54208..54432    	 +	74	49476700	-	BT9727_0047	-	conserved hypothetical protein	
46	 35.62       54532..58068    	 +	1178	49479988	mfd	BT9727_0048	-	transcription-repair coupling factor	
47	 36.13       58205..58741    	 +	178	49476701	spoVT	BT9727_0049	-	stage V sporulation protein T	
48	 34.83       58972..60573    	 +	533	49479931	-	BT9727_0050	-	integral membrane protein; stage V sporulation protein B	
49	 37.30       60586..62046    	 +	486	49480333	-	BT9727_0051	-	tetrapyrrole (Corrin/Porphyrin) methylases and MazG nucleotide pyrophosphohydrolase domain fusion protein	
50	 32.61       62061..62336    	 +	91	49479938	hslR	BT9727_0052	-	S4 domain protein; probable heat shock protein 15	
51	 34.25       62377..62703    	 +	108	49476702	-	BT9727_0053	-	conserved hypothetical protein	
52	 32.42       62700..63353    	 +	217	49480881	-	BT9727_0054	-	probable membrane protein	
53	 33.61       63350..63709    	 +	119	49479326	divIC	BT9727_0055	-	cell division protein DIVIC	
54	 42.44 +1    63797..64279    	 +	160	49479983	-	BT9727_0056	-	S1-type RNA-binding domain protein	
55	 36.92       64903..67329    	 +	808	49481740	spoIIE	BT9727_0057	-	serine/threonine specific protein phosphatase; stage II sporulation protein E	
56	 36.41       67563..68993    	 +	476	49476703	mesJ	BT9727_0058	-	cell cycle protein	
57	 34.81       68990..69532    	 +	180	49479325	hprT	BT9727_0059	-	hypoxanthine phosphoribosyltransferase (hypoxanthine-guanine phosphoribosyltransferase)	
58	 40.12 +1    69618..71519    	 +	633	49476704	ftsH	BT9727_0060	-	cell division protein	
59	 38.28       71744..72532    	 +	262	49479330	-	BT9727_0061	-	transcriptional activator, homolog of Bvg accessory factor	
60	 39.73 +1    72539..73414    	 +	291	49479980	hslO	BT9727_0062	-	33 kDa chaperonin (HSP33)	
61	 39.83 +1    73519..74442    	 +	307	49479972	cysK	BT9727_0063	-	cysteine synthase (cysteine synthase A) (O-acetylserine sulfhydrylase)	
62	 38.13       74663..76060    	 +	465	49479971	pabB	BT9727_0064	-	anthranilate synthase, component I  (para-aminobenzoate synthase)	
63	 40.31 +1    76066..76653    	 +	195	49479967	pabA	BT9727_0065	-	anthranilate synthase, component II (para-aminobenzoate synthase glutamine amidotransferase, component II )	
64	 35.40       76647..77519    	 +	290	49479966	pabC	BT9727_0066	-	4-amino-4-deoxychorismate lyase	
65	 39.15 +1    77512..78354    	 +	280	49479965	sul	BT9727_0067	-	dihydropteroate synthase (DHPS) (dihydropteroate pyrophosphorylase)	
66	 36.36       78355..78717    	 +	120	49479958	folB	BT9727_0068	-	dihydroneopterin aldolase	
67	 34.11       78714..79229    	 +	171	49478206	folK	BT9727_0069	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase (7,8-dihydro-6-hydroxymethylpterin)	
68	 39.22 +1    79181..79384    	 +	67	49479321	-	BT9727_0070	-	probable transcriptional regulator	
69	 39.24 +1    79408..80406    	 +	332	49481554	-	BT9727_0071	-	possible TIM-barrel protein, NifR3 family	
70	 36.80       80566..82065    	 +	499	49481679	lysS	BT9727_0072	-	lysine--tRNA ligase (lysyl-tRNA synthetase)	
71	 33.12       93143..93604    	 +	153	49479948	ctsR	BT9727_0075	-	transcriptional regulator	
72	 35.88       93778..94326    	 +	182	49481553	-	BT9727_0076	-	UvrB/UvrC protein	
73	 34.74       94331..95395    	 +	354	49479316	karG	BT9727_0077	-	ATP: guanido phosphotransferase family; probable arginine kinase	
74	 39.16 +1    95418..97853    	 +	811	49481552	clpC	BT9727_0078	-	negative regulator of genetic competence clpC/mecB (ATP-dependent Clp protease)	
75	 39.58 +1    97950..99326    	 +	458	49479310	radA	BT9727_0079	-	DNA repair protein	
76	 37.43       99330..100403   	 +	357	49476705	-	BT9727_0080	-	DNA-binding protein	
77	 35.23      100564..101673   	 +	369	49479305	-	BT9727_0081	-	conserved hypothetical protein, possible PIN domain protein	
78	 39.21 +1   101690..102370   	 +	226	49479302	ispD	BT9727_0082	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (MEP cytidylyltransferase) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MCT)	
79	 37.74      102485..102961   	 +	158	49479298	ispF	BT9727_0083	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECDP-synthase)	
80	 36.97      103051..104508   	 +	485	49476707	gltX	BT9727_0084	-	glutamate--tRNA ligase (glutamyl-tRNA synthetase)	
81	 37.39      104941..105606   	 +	221	49476708	cysE	BT9727_0085	-	serine O-acetyltransferase	
82	 36.70      105587..106984   	 +	465	49481691	cysS	BT9727_0086	-	cysteine--tRNA ligase (cysteinyl-tRNA synthetase)	
83	 38.24      106987..107394   	 +	135	49479930	-	BT9727_0087	-	conserved hypothetical protein	
84	 37.50      107391..108134   	 +	247	49476710	-	BT9727_0088	-	tRNA/rRNA methyltransferase (SpoU); probable TrmH family	
85	 37.62      108138..108650   	 +	170	49479929	-	BT9727_0089	-	conserved hypothetical protein	
86	 36.07      108718..109374   	 +	218	49476711	spo0H	BT9727_0090	-	RNA polymerase sigma-30 factor	
87	 38.54      109688..109879   	 +	63	49476712	secE	BT9727_0091	-	preprotein translocase secE subunit	
88	 37.64      109998..110531   	 +	177	49476713	nusG	BT9727_0092	-	transcription antitermination factor	
89	 42.96 +2   110699..111124   	 +	141	49479292	rplK	BT9727_0093	-	ribosomal protein L11 (50S ribosomal protein L11)	
90	 40.84 +1   111301..111993   	 +	230	49479291	rplA	BT9727_0094	-	ribosomal protein L1 (50S ribosomal protein L1)	
91	 40.92 +1   112226..112726   	 +	166	49479290	rplJ	BT9727_0095	-	ribosomal protein L10 (50S ribosomal protein L10)	
92	 39.17 +1   112794..113153   	 +	119	49479289	rplL	BT9727_0096	-	ribosomal protein L7/L12 (50S ribosomal protein L7/L12)	
93	 38.67      113230..113829   	 +	199	49476714	-	BT9727_0097	-	conserved hypothetical protein, possible methyltransferase	
94	 41.77 +1   114123..117656   	 +	1177	49479286	rpoB	BT9727_0098	-	DNA-directed RNA polymerase, beta subunit	
95	 40.39 +1   117694..121305   	 +	1203	49479285	rpoC	BT9727_0099	-	DNA-directed RNA polymerase, beta' subunit	
96	 36.88      121386..121667   	 +	93	49476715	-	BT9727_0100	-	ribosomal protein, L7Ae family (50S ribosomal protein)	
97	 40.43 +1   121782..122204   	 +	140	49476716	rpsl	BT9727_0101	-	ribosomal protein S12 (30S ribosomal protein S12)	
98	 42.46 +1   122234..122704   	 +	156	49479282	rpsG	BT9727_0102	-	ribosomal protein S7 (30S ribosomal protein S7)	
99	 42.47 +1   122912..124990   	 +	692	49478969	fusA	BT9727_0103	-	protein-synthesizing GTPase (translation elongation factor G (EF-G))	
100	 43.86 +2   125108..126295   	 +	395	49479276	tufA	BT9727_0104	-	protein-synthesizing GTPase (translation elongation factor Tu (EF-TU))	

 
 35.52 MEAN 
 
 3.51  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.