IslandPath Analysis: Bartonella quintana str. Toulose



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.09   STD DEV: 2.95
Bartonella quintana, complete genome - 0..1581384
1142 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 38.91        1..843      	 +	280	49473689	-	BQ00010	-	hypothetical protein	
2	 35.34 -1      840..1436     	 +	198	49473690	maf-1	BQ00020	-	Septum formation maf protein	
3	 38.78        1429..2310     	 +	293	49473691	aroE	BQ00030	-	Shikimate 5-dehydrogenase	
4	 33.16 -2     2307..2894     	 +	195	49473692	coaE	BQ00040	-	Dephospho-CoA kinase	
5	 38.14        2899..3606     	 +	235	49473693	dnaQ	BQ00050	-	DNA polymerase III epsilon chain	
6	 39.77        3938..6844     	 +	968	49473694	polA	BQ00060	-	DNA polymerase I	
7	 39.64        6851..7738     	 -	295	49473695	-	BQ00070	-	hypothetical protein	
8	 38.89        7829..8602     	 -	257	49473696	-	BQ00080	-	hypothetical protein	
9	 32.74 -2     9856..10359    	 -	167	49473697	lspA	BQ00090	-	Lipoprotein signal peptidase	
10	 39.78       10385..11221    	 -	278	49473698	-	BQ00100	-	tRNA/rRNA methyltransferase	
11	 35.93 -1    12328..12597    	 -	89	49473699	-	BQ00120	-	hypothetical protein	
12	 42.29       12606..12884    	 -	92	49473700	ihfB	BQ00130	-	Integration host factor beta-subunit	
13	 37.52       13076..13744    	 +	222	49473701	-	BQ00140	-	hypothetical protein	
14	 40.59       13858..14436    	 +	192	49473702	-	BQ00150	-	hypothetical protein	
15	 40.50       14443..15237    	 +	264	49473703	-	BQ00160	-	ABC transporter/ATP-binding protein	
16	 39.78       16415..16879    	 +	154	49473704	ptsN	BQ00170	-	Nitrogen regulatory IIA	
17	 40.39       18280..18789    	 +	169	49473705	-	BQ00180	-	hypothetical protein	
18	 41.71       18831..20060    	 +	409	49473706	-	BQ00190	-	hypothetical protein	
19	 40.25       21803..23464    	 +	553	49473707	lysS	BQ00220	-	Lysyl-tRNA synthetase	
20	 41.70       23464..25041    	 +	525	49473708	prfC	BQ00230	-	Peptide chain release factor 3	
21	 39.51       25143..25466    	 -	107	49473709	trxA	BQ00240	-	Thioredoxin	
22	 40.07       25577..29050    	 -	1157	49473710	addA	BQ00250	-	ATP-dependent nuclease subunit A	
23	 41.44       29047..32166    	 -	1039	49473711	-	BQ00260	-	hypothetical protein	
24	 41.98       33914..35416    	 -	500	49473712	-	BQ00270	-	Chlorosome protein	
25	 40.16       35491..37935    	 -	814	49473713	-	BQ00280	-	Sensor histidine kinase protein	
26	 41.06       37975..39372    	 -	465	49473714	ahcY	BQ00290	-	Adenosylhomocysteinase	
27	 40.30       40065..41069    	 -	334	49473715	-	BQ00300	-	hypothetical NADH-ubiquinone oxidoreductase	
28	 39.24       41107..42426    	 -	439	49473716	folC	BQ00310	-	Folylpolyglutamate synthase	
29	 41.91       42430..43350    	 -	306	49473717	accD	BQ00320	-	Acetyl-coenzyme A carboxylase carboxyltransferase beta chain	
30	 43.31 +1    45452..46834    	 -	460	49473718	dfp	BQ00340	-	DNA/pantothenate metabolism flavoprotein	
31	 42.22       46904..48490    	 -	528	49473719	aarF	BQ00350	-	Ubiquinone biosynthesis protein Aarf	
32	 39.72       48493..49275    	 -	260	49473720	ubiE	BQ00360	-	Ubiquinone/menaquinone biosynthesis	
33	 42.79       49393..51825    	 -	810	49473721	gyrB	BQ00370	-	DNA gyrase subunit B	
34	 36.90 -1    52812..53681    	 +	289	49473722	-	BQ00380	-	ABC transporter, periplasmic amino acid-binding protein	
35	 44.49 +1    53694..55226    	 -	510	49473723	comM	BQ00390	-	Competence protein comM	
36	 41.03       55641..57602    	 +	653	49473724	-	BQ00400	-	hypothetical protein	
37	 38.65       57602..62248    	 +	1548	49473725	-	BQ00410	-	hypothetical protein	
38	 37.86       62277..64043    	 -	588	49473726	msbA	BQ00420	-	ABC transporter, ATP-binding protein	
39	 41.04       64266..64784    	 -	172	49473727	infC	BQ00430	-	Translation initiation factor IF-3	
40	 42.73       64981..65778    	 +	265	49473728	-	BQ00440	-	hypothetical protein	
41	 40.70       65796..66542    	 +	248	49473729	-	BQ00450	-	hypothetical protein	
42	 42.37       66765..67937    	 +	390	49473730	dapE	BQ00460	-	Succinyl-diaminopimelate desuccinylase	
43	 42.83       68037..69236    	 -	399	49473731	hemN	BQ00470	-	Oxygen-independent coproporphyrinogen III oxidase	
44	 42.28       69233..69880    	 -	215	49473732	-	BQ00480	-	hypothetical protein	
45	 43.42 +1    70197..71267    	 +	356	49473733	hrcA	BQ00490	-	Heat-inducible transcription repressor hrcA	
46	 41.18       71392..72054    	 +	220	49473734	grpE	BQ00500	-	Heat shock protein (hsp-70 cofactor) grpE	
47	 39.26       72169..72708    	 -	179	49473735	-	BQ00510	-	ABC transporter (permease)	
48	 40.07       73320..73616    	 -	98	49473736	ptsH	BQ00520	-	Phosphocarrier protein	
49	 40.44       73627..74034    	 -	135	49473737	-	BQ00530	-	Fructose-specific IIa component	
50	 38.71       74167..74631    	 -	154	49473738	-	BQ00540	-	hypothetical protein	
51	 41.68       74655..76439    	 -	594	49473739	-	BQ00550	-	Two-component sensor histidine kinase	
52	 40.39       76479..77201    	 -	240	49473740	-	BQ00560	-	Transcriptional regulator	
53	 37.50       77575..78030    	 +	151	49473741	-	BQ00570	-	hypothetical protein	
54	 39.71       78169..78717    	 -	182	49473742	-	BQ00580	-	hypothetical protein	
55	 41.42       79609..81501    	 +	630	49473743	dnaK	BQ00590	-	Heat shock protein 70 DnaK	
56	 42.87       81660..82802    	 +	380	49473744	dnaJ1	BQ00600	-	Heat shock protein DnaJ	
57	 40.73       84547..85452    	 +	301	49473745	argB	BQ00620	-	Acetylglutamate kinase	
58	 38.17       85475..86383    	 +	302	49473746	-	BQ00630	-	hypothetical protein	
59	 41.25       86968..88773    	 +	601	49473747	lepA	BQ00640	-	GTP-binding protein lepA	
60	 40.75       88850..89698    	 -	282	49473748	dapD	BQ00650	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	
61	 38.89       89804..90667    	 +	287	49473749	-	BQ00660	-	hypothetical protein	
62	 43.55 +1    90700..91443    	 -	247	49473750	truA	BQ00670	-	tRNA pseudouridine synthase A	
63	 43.12 +1    91445..92374    	 -	309	49473751	fmt	BQ00680	-	Methionyl-tRNA formyltransferase	
64	 38.98       92374..92904    	 -	176	49473752	def	BQ00690	-	Polypeptide deformylase	
65	 40.59       92994..94178    	 +	394	49473753	-	BQ00700	-	hypothetical protein	
66	 41.50       94286..94873    	 +	195	49473754	-	BQ00710	-	hypothetical protein	
67	 40.48       96302..96553    	 -	83	49473755	-	BQ00720	-	hypothetical protein	
68	 37.73       96579..97010    	 -	143	49473756	ibpA1	BQ00730	-	Heat shock protein	
69	 40.76       97118..97858    	 +	246	49473757	nth	BQ00740	-	Endonuclease III	
70	 37.25       98007..98210    	 +	67	49473758	rpmI	BQ00750	-	50s ribosomal protein l35	
71	 42.04       98244..98645    	 +	133	49473759	rplT	BQ00760	-	50s ribosomal protein l20	
72	 40.52       98740..99825    	 +	361	49473760	pheS	BQ00770	-	Phenylalanyl-tRNA synthetase alpha chain	
73	 42.53       99857..102271   	 +	804	49473761	pheT	BQ00780	-	Phenylalanyl-tRNA synthetase beta chain	
74	 41.03      102546..103454   	 +	302	49473762	yfeA	BQ00790	-	Iron transport protein yfeA	
75	 39.86      103451..104278   	 +	275	49473763	yfeB	BQ00800	-	Iron transport protein yfeB	
76	 37.72      104275..105141   	 +	288	49473764	yfeC	BQ00810	-	Iron transport system membrane protein yfeC	
77	 37.42      105138..106043   	 +	301	49473765	yfeD	BQ00820	-	Iron transport system membrane protein yfeD	
78	 38.50      106455..106841   	 +	128	49473766	-	BQ00830	-	hypothetical protein	
79	 40.84      107234..108538   	 -	434	49473767	pncB	BQ00840	-	Nicotinate phosphoribosyltransferase	
80	 40.24      108670..117237   	 -	2855	49473768	-	BQ00850	-	Cyclic beta 1-2 glucan synthetase	
81	 41.98      117438..119138   	 -	566	49473769	rpsA	BQ00860	-	30s ribosomal protein s1	
82	 40.90      119272..119919   	 -	215	49473770	cmk	BQ00870	-	Cytidylate kinase	
83	 42.44      119916..121244   	 -	442	49473771	aroA	BQ00880	-	3-phosphoshikimate 1-carboxyvinyltransferase	
84	 40.68      121433..121813   	 +	126	49473772	-	BQ00890	-	hypothetical protein	
85	 42.00      125213..127948   	 -	911	49473773	mutS	BQ00930	-	DNA mismatch repair protein mutS	
86	 41.99      128158..130455   	 +	765	49473774	maeB	BQ00940	-	NADP-dependent malic enzyme	
87	 37.32      130507..130983   	 -	158	49473775	secB	BQ00950	-	Protein-export protein secB	
88	 33.53 -2   131125..131628   	 -	167	49473776	-	BQ00960	-	hypothetical protein	
89	 36.94 -1   131812..132504   	 +	230	49473777	-	BQ00970	-	hypothetical protein	
90	 40.12      134082..135083   	 -	333	49473778	-	BQ00990	-	Heat shock protein hsp33 homolog	
91	 40.70      136061..137254   	 -	397	49473779	argD	BQ01010	-	Acetylornithine aminotransferase	
92	 43.82 +1   137737..138270   	 +	177	49473780	-	BQ01020	-	hypothetical protein	
93	 33.96 -2   139052..139693   	 -	213	49473781	dsbE	BQ01040	-	Thiol 3A-disulfide interchange protein	
94	 36.90 -1   139668..139919   	 -	83	49473782	-	BQ01050	-	hypothetical protein	
95	 41.54      139907..140686   	 -	259	49473783	ccmC	BQ01060	-	Heme exporter protein C	
96	 39.04      140732..141397   	 -	221	49473784	ccmB	BQ01070	-	Heme exporter protein B	
97	 41.31      141394..142020   	 -	208	49473785	ccmA	BQ01080	-	Heme exporter protein A	
98	 42.26      142319..145006   	 +	895	49473786	acnA	BQ01090	-	Aconitate hydratase	
99	 46.44 +2   145233..145499   	 +	88	49473787	rpsT	BQ01100	-	30s ribosomal protein s20	
100	 41.41      146196..147767   	 +	523	49473788	dnaA	BQ01110	-	Chromosomal replication initiator protein D	

 
 40.09 MEAN 
 
 2.95  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.