IslandPathversion 1.0

IslandPath Analysis: Bacillus anthracis str. Ames 0581



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.42 STD DEV: 3.63
Bacillus anthracis str. 'Ames Ancestor', complete genome - 0..5227419
5309 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 35.42      407..1747     	 +	446	47525255	dnaA	GBAA0001	-	chromosomal replication initiator protein DnaA	
2	 32.11        1926..3065     	 +	379	47525256	dnaN-1	GBAA0002	-	DNA polymerase III, beta subunit	
3	 34.74        3193..3405     	 +	70	47777763	-	GBAA0003	-	conserved hypothetical protein	
4	 34.57        3418..4545     	 +	375	47525258	recF	GBAA0004	-	DNA replication and repair protein RecF	
5	 36.92        4584..6506     	 +	640	47525259	gyrB	GBAA0005	-	DNA gyrase, B subunit	
6	 36.53        6595..9066     	 +	823	47525260	gyrA	GBAA0006	-	DNA gyrase, A subunit	
7	 38.52       15468..16931    	 +	487	47525264	guaB	GBAA0008	-	inosine-5'-monophosphate dehydrogenase	
8	 35.09       17045..18352    	 +	435	47525265	dacA	GBAA0009	-	D-alanyl-D-alanine carboxypeptidase	
9	 42.79 +2    18514..19401    	 +	295	47525266	-	GBAA0010	-	pyridoxine biosynthesis protein	
10	 40.27 +1    19420..20010    	 +	196	47525267	-	GBAA0011	-	glutamine amidotransferase, SNO family	
11	 38.27       20338..21612    	 +	424	47525268	serS	GBAA0012	-	seryl-tRNA synthetase	
12	 34.78       21869..22420    	 +	183	47525269	-	GBAA0013	-	hypothetical protein	
13	 35.87       22456..23124    	 -	222	47525270	-	GBAA0014	-	deoxynucleoside kinase family protein	
14	 34.59       23127..23762    	 -	211	47525271	-	GBAA0015	-	deoxynucleoside kinase family protein	
15	 30.56 -1    23888..24427    	 -	179	47525272	-	GBAA0016	-	isochorismatase family protein	
16	 32.62       24405..24545    	 +	46	47777764	-	GBAA0017	-	hypothetical protein	
17	 37.72       24535..25035    	 +	166	47525273	-	GBAA0018	-	cytidine/deoxycytidylate deaminase zinc-binding domain protein	
18	 38.90       25512..27200    	 +	562	47525274	dnaX	GBAA0019	-	DNA polymerase III, gamma and tau subunits	
19	 36.97       27223..27552    	 +	109	47525275	-	GBAA0020	-	conserved hypothetical protein TIGR00103	
20	 40.03 +1    27567..28163    	 +	198	47525276	recR	GBAA0021	-	recombination protein RecR	
21	 32.88       28178..28399    	 +	73	47525277	-	GBAA0022	-	conserved hypothetical protein	
22	 32.22       28614..28883    	 +	89	47525278	bofA	GBAA0024	-	sigma-k factor processing regulatory protein BofA	
23	 25.56 -2    34303..34482    	 +	59	47525281	-	GBAA0025	-	csfB protein, putative	
24	 35.09       34554..35975    	 +	473	47525282	cad-1	GBAA0026	-	lysine decarboxylase	
25	 36.04       35977..36603    	 +	208	47525283	tmk	GBAA0027	-	thymidylate kinase	
26	 36.99       36639..37622    	 +	327	47777765	holB	GBAA0028	-	DNA polymerase III, delta prime subunit	
27	 36.44       37619..38455    	 +	278	47525285	-	GBAA0029	-	conserved hypothetical protein	
28	 32.19       38470..38820    	 +	116	47777766	-	GBAA0030	-	conserved hypothetical protein	
29	 34.41       38941..39681    	 +	246	47525287	-	GBAA0031	-	conserved hypothetical protein	
30	 34.02       39668..39958    	 +	96	47525288	-	GBAA0032	-	conserved hypothetical protein	
31	 34.82       39927..40802    	 +	291	47525289	-	GBAA0033	-	conserved hypothetical protein TIGR00096	
32	 33.68       40823..41107    	 -	94	47525290	abrB	GBAA0034	-	transition state transcriptional regulatory protein AbrB	
33	 36.01       41598..43580    	 +	660	47777767	metS	GBAA0036	-	methionyl-tRNA synthetase	
34	 37.50       43746..44513    	 +	255	47525292	-	GBAA0037	-	deoxyribonuclease, TatD family	
35	 37.63       44728..45285    	 +	185	47525293	-	GBAA0038	-	primase-related protein	
36	 36.06       45282..46160    	 +	292	47525294	ksgA	GBAA0039	-	dimethyladenosine transferase	
37	 37.50       46271..47134    	 +	287	47525295	-	GBAA0040	-	yabG protein	
38	 36.78       47373..47633    	 +	86	47525296	-	GBAA0041	-	veg protein	
39	 39.44 +1    47725..47904    	 +	59	50196906	sspF	GBAA0042	-	small, acid-soluble spore protein	
40	 38.28       48101..48970    	 +	289	47777768	ispE	GBAA0043	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	
41	 36.98       49025..49873    	 +	282	47525299	purR	GBAA0044	-	pur operon repressor PurR	
42	 22.50 -2    49860..49979    	 +	39	47777769	-	GBAA0045	-	hypothetical protein	
43	 35.47       49996..50370    	 +	124	47525300	-	GBAA0046	-	endoribonuclease L-PSP, putative	
44	 40.82 +1    50523..50816    	 +	97	47777770	spoVG	GBAA0047	-	stage V sporulation protein G	
45	 38.33       51139..52518    	 +	459	47525302	gcaD	GBAA0048	-	UDP-N-acetylglucosamine pyrophosphorylase	
46	 37.21       52537..53490    	 +	317	47525303	prs	GBAA0049	-	ribose-phosphate pyrophosphokinase	
47	 34.40       53563..54123    	 +	186	47525304	spoVC	GBAA0050	-	peptidyl-tRNA hydrolase	
48	 32.89       54194..54418    	 +	74	47525305	-	GBAA0051	-	conserved hypothetical protein	
49	 35.74       54524..58054    	 +	1176	47525306	mfd	GBAA0052	-	transcription-repair coupling factor	
50	 36.31       58190..58726    	 +	178	47525307	spoVT	GBAA0053	-	stage V sporulation protein T	
51	 34.83       58957..60558    	 +	533	47525308	-	GBAA0054	-	stage V sporulation protein B, putative	
52	 37.30       60571..62031    	 +	486	47777771	-	GBAA0055	-	tetrapyrrole methylase family protein/MazG family protein	
53	 32.61       62046..62321    	 +	91	47525310	-	GBAA0056	-	S4 domain protein	
54	 33.66       62380..62688    	 +	102	47777772	-	GBAA0057	-	yabP protein	
55	 32.42       62685..63338    	 +	217	47525312	-	GBAA0058	-	membrane protein, putative	
56	 33.61       63335..63694    	 +	119	47525313	divIC-1	GBAA0059	-	cell division protein DivIC	
57	 42.44 +1    63782..64264    	 +	160	47525314	-	GBAA0060	-	S1 RNA binding domain protein	
58	 36.91       64936..67314    	 +	792	47525315	spoIIE	GBAA0061	-	stage II sporulation protein E	
59	 36.48       67548..68978    	 +	476	47525316	-	GBAA0062	-	conserved hypothetical protein	
60	 34.81       68975..69517    	 +	180	47525317	hpt-1	GBAA0063	-	hypoxanthine phosphoribosyltransferase	
61	 40.12 +1    69603..71504    	 +	633	47525318	ftsH	GBAA0064	-	cell division protein FtsH	
62	 38.28       71729..72517    	 +	262	47777773	-	GBAA0065	-	transcriptional activator, putative, Baf family	
63	 39.84 +1    72524..73399    	 +	291	47525320	hslO	GBAA0066	-	chaperonin, 33 kDa	
64	 39.83 +1    73504..74427    	 +	307	47525321	cysK-1	GBAA0067	-	cysteine synthase A	
65	 38.20       74648..76045    	 +	465	47525322	pabB	GBAA0068	-	para-aminobenzoate synthase, component I	
66	 39.63 +1    76051..76638    	 +	195	47525323	pabA-1	GBAA0069	-	para-aminobenzoate synthase glutamine amidotransferase, component II	
67	 35.05       76632..77504    	 +	290	47525324	pabC	GBAA0070	-	4-amino-4-deoxychorismate lyase PabC	
68	 39.15 +1    77497..78339    	 +	280	47525325	folP	GBAA0071	-	dihydropteroate synthase	
69	 36.64       78340..78702    	 +	120	47777774	folB	GBAA0072	-	dihydroneopterin aldolase	
70	 34.11       78699..79214    	 +	171	47525327	folK	GBAA0073	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	
71	 39.22 +1    79166..79369    	 +	67	47525328	-	GBAA0074	-	DNA-binding protein	
72	 39.38 +1    79417..80391    	 +	324	47525329	-	GBAA0075	-	TIM-barrel protein, putative, NifR3 family	
73	 36.73       80551..82050    	 +	499	47525330	lysS	GBAA0076	-	lysyl-tRNA synthetase	
74	 33.33       87415..87876    	 +	153	47525333	ctsR	GBAA0077	-	transcriptional regulator CtsR	
75	 35.34       88050..88598    	 +	182	47525334	-	GBAA0078	-	conserved hypothetical protein	
76	 34.65       88603..89667    	 +	354	47525335	-	GBAA0079	-	phosphotransferase domain protein	
77	 39.12 +1    89690..92125    	 +	811	47525336	-	GBAA0080	-	negative regulator of genetic competence ClpC/MecB	
78	 39.51 +1    92222..93598    	 +	458	47525337	radA	GBAA0081	-	DNA repair protein RadA	
79	 37.34       93602..94675    	 +	357	47525338	-	GBAA0082	-	DNA-binding protein, putative	
80	 35.05       94836..95945    	 +	369	47525339	-	GBAA0083	-	conserved hypothetical protein	
81	 39.35 +1    95962..96642    	 +	226	47525340	ispD	GBAA0084	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	
82	 37.95       96757..97233    	 +	158	47525341	ispF	GBAA0085	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	
83	 37.11       97323..98780    	 +	485	47525342	gltX	GBAA0086	-	glutamyl-tRNA synthetase	
84	 37.39       99213..99878    	 +	221	47525343	cysE	GBAA0088	-	serine O-acetyltransferase	
85	 36.77       99859..101256   	 +	465	47525344	cysS	GBAA0089	-	cysteinyl-tRNA synthetase	
86	 38.24      101259..101666   	 +	135	47525345	-	GBAA0090	-	conserved hypothetical protein	
87	 37.50      101663..102406   	 +	247	47525346	-	GBAA0091	-	RNA methyltransferase, TrmH family, group 3	
88	 37.62      102410..102922   	 +	170	47525347	-	GBAA0092	-	conserved hypothetical protein	
89	 35.92      102990..103646   	 +	218	47525348	sigH	GBAA0093	-	RNA polymerase sigma-30 factor	
90	 33.33      103778..103924   	 +	48	47777775	rpmG-1	GBAA0094	-	ribosomal protein L33	
91	 37.78      103957..104136   	 +	59	47525349	-	GBAA0095	-	preprotein translocase, SecE subunit	
92	 37.27      104268..104801   	 +	177	50196907	nusG	GBAA0096	-	transcription antitermination protein NusG	
93	 42.96 +2   104969..105394   	 +	141	47777776	rplK	GBAA0097	-	ribosomal protein L11	
94	 40.84 +1   105572..106264   	 +	230	47525352	rplA	GBAA0098	-	ribosomal protein L1	
95	 41.12 +1   106497..106997   	 +	166	47525354	rplJ	GBAA0099	-	ribosomal protein L10	
96	 39.17 +1   107065..107424   	 +	119	47525355	rplL	GBAA0100	-	ribosomal protein L7/L12	
97	 38.50      107499..108098   	 +	199	47525356	-	GBAA0101	-	ybxB protein	
98	 41.74 +1   108391..111924   	 +	1177	50196908	rpoB	GBAA0102	-	DNA-directed RNA polymerase, beta subunit	
99	 40.61 +1   111989..115573   	 +	1194	47525359	rpoC	GBAA0103	-	DNA-directed RNA polymerase, beta' subunit	
100	 36.55      115687..115935   	 +	82	47777777	-	GBAA0104	-	ribosomal protein L7A family	

 
 35.42 MEAN 
 
 3.63  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.