IslandPath Analysis: Bacillus anthracis Ames



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.42   STD DEV: 3.63
Bacillus anthracis str. Ames, complete genome - 0..5227293
5311 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 35.42      407..1747     	 +	446	30260196	dnaA	BA0001	L	chromosomal replication initiator protein DnaA	
2	 32.11        1926..3065     	 +	379	30260197	dnaN-1	BA0002	L	DNA polymerase III, beta subunit	
3	 34.74        3193..3405     	 +	70	30260198	-	BA0003	S	conserved hypothetical protein	
4	 34.57        3418..4545     	 +	375	30260199	recF	BA0004	L	DNA replication and repair protein RecF	
5	 36.92        4584..6506     	 +	640	30260200	gyrB	BA0005	L	DNA gyrase, B subunit	
6	 36.53        6595..9066     	 +	823	30260201	gyrA	BA0006	L	DNA gyrase, A subunit	
7	 38.52       15468..16931    	 +	487	30260202	guaB	BA0008	F	inosine-5'-monophosphate dehydrogenase	
8	 35.09       17045..18352    	 +	435	30260203	dacA	BA0009	-	D-alanyl-D-alanine carboxypeptidase	
9	 42.79 +2    18514..19401    	 +	295	30260204	-	BA0010	H	pyridoxine biosynthesis protein	
10	 40.27 +1    19420..20010    	 +	196	30260205	-	BA0011	H	glutamine amidotransferase, SNO family	
11	 38.27       20338..21612    	 +	424	30260206	serS	BA0012	J	seryl-tRNA synthetase	
12	 34.78       21869..22420    	 +	183	30260207	-	BA0013	-	hypothetical protein	
13	 35.87       22456..23124    	 -	222	30260208	-	BA0014	F	deoxynucleoside kinase family protein	
14	 34.59       23127..23762    	 -	211	30260209	-	BA0015	F	deoxynucleoside kinase family protein	
15	 30.56 -1    23888..24427    	 -	179	30260210	-	BA0016	Q	isochorismatase family protein	
16	 32.62       24405..24545    	 +	46	30260211	-	BA0017	-	hypothetical protein	
17	 37.72       24535..25035    	 +	166	30260212	-	BA0018	F	cytidine/deoxycytidylate deaminase zinc-binding domain protein	
18	 38.90       25512..27200    	 +	562	30260213	dnaX	BA0019	L	DNA polymerase III, gamma and tau subunits	
19	 36.97       27223..27552    	 +	109	30260214	-	BA0020	S	conserved hypothetical protein TIGR00103	
20	 40.03 +1    27567..28163    	 +	198	30260215	recR	BA0021	L	recombination protein RecR	
21	 32.88       28178..28399    	 +	73	30260216	-	BA0022	-	conserved hypothetical protein	
22	 32.22       28614..28883    	 +	89	30260217	bofA	BA0024	-	sigma-k factor processing regulatory protein BofA	
23	 25.56 -2    34303..34482    	 +	59	30260218	-	BA0025	-	csfB protein, putative	
24	 35.09       34554..35975    	 +	473	30260219	cad-1	BA0026	-	lysine decarboxylase	
25	 36.04       35977..36603    	 +	208	30260220	tmk	BA0027	F	thymidylate kinase	
26	 36.99       36639..37622    	 +	327	30260221	holB	BA0028	L	DNA polymerase III, delta prime subunit	
27	 36.44       37619..38455    	 +	278	30260222	-	BA0029	S	conserved hypothetical protein	
28	 32.19       38470..38820    	 +	116	30260223	-	BA0030	S	conserved hypothetical protein	
29	 34.41       38941..39681    	 +	246	30260224	-	BA0031	R	conserved hypothetical protein	
30	 34.02       39668..39958    	 +	96	30260225	-	BA0032	L	conserved hypothetical protein	
31	 34.82       39927..40802    	 +	291	30260226	-	BA0033	R	conserved hypothetical protein TIGR00096	
32	 33.68       40823..41107    	 -	94	30260227	abrB	BA0034	K	transition state transcriptional regulatory protein AbrB	
33	 36.01       41598..43580    	 +	660	30260228	metS	BA0036	J	methionyl-tRNA synthetase	
34	 37.50       43746..44513    	 +	255	30260229	-	BA0037	L	deoxyribonuclease, TatD family	
35	 37.63       44728..45285    	 +	185	30260230	-	BA0038	L	primase-related protein	
36	 36.06       45282..46160    	 +	292	30260231	ksgA	BA0039	J	dimethyladenosine transferase	
37	 37.50       46271..47134    	 +	287	30260232	-	BA0040	-	yabG protein	
38	 36.78       47373..47633    	 +	86	30260233	-	BA0041	S	veg protein	
39	 39.44 +1    47725..47904    	 +	59	30260234	sspF	BA0042	-	small, acid-soluble spore protein	
40	 38.28       48101..48970    	 +	289	30260235	ispE	BA0043	I	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	
41	 36.98       49025..49873    	 +	282	30260236	purR	BA0044	F	pur operon repressor PurR	
42	 22.50 -2    49860..49979    	 +	39	30260237	-	BA0045	-	hypothetical protein	
43	 35.47       49996..50370    	 +	124	30260238	-	BA0046	J	endoribonuclease L-PSP, putative	
44	 40.82 +1    50523..50816    	 +	97	30260239	spoVG	BA0047	M	stage V sporulation protein G	
45	 38.33       51139..52518    	 +	459	30260240	gcaD	BA0048	M	UDP-N-acetylglucosamine pyrophosphorylase	
46	 37.21       52537..53490    	 +	317	30260241	prs	BA0049	-	ribose-phosphate pyrophosphokinase	
47	 34.40       53563..54123    	 +	186	30260242	spoVC	BA0050	-	peptidyl-tRNA hydrolase	
48	 32.89       54194..54418    	 +	74	30260243	-	BA0051	-	conserved hypothetical protein	
49	 35.74       54524..58054    	 +	1176	30260244	mfd	BA0052	L	transcription-repair coupling factor	
50	 36.31       58190..58726    	 +	178	30260245	spoVT	BA0053	K	stage V sporulation protein T	
51	 34.83       58957..60558    	 +	533	30260246	-	BA0054	R	stage V sporulation protein B, putative	
52	 37.30       60571..62031    	 +	486	30260247	-	BA0055	R	tetrapyrrole methylase family protein/MazG family protein	
53	 32.61       62046..62321    	 +	91	30260248	-	BA0056	J	S4 domain protein	
54	 33.66       62380..62688    	 +	102	30260249	-	BA0057	-	yabP protein	
55	 32.42       62685..63338    	 +	217	30260250	-	BA0058	-	membrane protein, putative	
56	 33.61       63335..63694    	 +	119	30260251	divIC-1	BA0059	D	cell division protein DivIC	
57	 42.44 +1    63782..64264    	 +	160	30260252	-	BA0060	-	S1 RNA binding domain protein	
58	 36.91       64936..67314    	 +	792	30260253	spoIIE	BA0061	-	stage II sporulation protein E	
59	 36.48       67548..68978    	 +	476	30260254	-	BA0062	D	conserved hypothetical protein	
60	 34.81       68975..69517    	 +	180	30260255	hpt-1	BA0063	F	hypoxanthine phosphoribosyltransferase	
61	 40.12 +1    69603..71504    	 +	633	30260256	ftsH	BA0064	O	cell division protein FtsH	
62	 38.28       71729..72517    	 +	262	30260257	-	BA0065	K	transcriptional activator, putative, Baf family	
63	 39.84 +1    72524..73399    	 +	291	30260258	hslO	BA0066	O	chaperonin, 33 kDa	
64	 39.83 +1    73504..74427    	 +	307	30260259	cysK-1	BA0067	E	cysteine synthase A	
65	 38.20       74648..76045    	 +	465	30260260	pabB	BA0068	E	para-aminobenzoate synthase, component I	
66	 39.63 +1    76051..76638    	 +	195	30260261	pabA-1	BA0069	-	para-aminobenzoate synthase glutamine amidotransferase, component II	
67	 35.05       76632..77504    	 +	290	30260262	pabC	BA0070	E	4-amino-4-deoxychorismate lyase PabC	
68	 39.15 +1    77497..78339    	 +	280	30260263	folP	BA0071	-	dihydropteroate synthase	
69	 36.64       78340..78702    	 +	120	30260264	folB	BA0072	H	dihydroneopterin aldolase	
70	 34.11       78699..79214    	 +	171	30260265	folK	BA0073	H	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	
71	 39.22 +1    79166..79369    	 +	67	30260266	-	BA0074	K	DNA-binding protein	
72	 39.38 +1    79417..80391    	 +	324	30260267	-	BA0075	-	TIM-barrel protein, putative, NifR3 family	
73	 36.73       80551..82050    	 +	499	30260268	lysS	BA0076	J	lysyl-tRNA synthetase	
74	 33.33       87415..87876    	 +	153	30260269	ctsR	BA0077	K	transcriptional regulator CtsR	
75	 35.34       88050..88598    	 +	182	30260270	-	BA0078	S	conserved hypothetical protein	
76	 34.65       88603..89667    	 +	354	30260271	-	BA0079	E	phosphotransferase domain protein	
77	 39.12 +1    89690..92125    	 +	811	30260272	-	BA0080	O	negative regulator of genetic competence ClpC/MecB	
78	 39.51 +1    92222..93598    	 +	458	30260273	radA	BA0081	O	DNA repair protein RadA	
79	 37.34       93602..94675    	 +	357	30260274	-	BA0082	R	DNA-binding protein, putative	
80	 35.05       94836..95945    	 +	369	30260275	-	BA0083	R	conserved hypothetical protein	
81	 39.35 +1    95962..96642    	 +	226	30260276	ispD	BA0084	I	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	
82	 37.95       96757..97233    	 +	158	30260277	ispF	BA0085	I	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	
83	 37.11       97323..98780    	 +	485	30260278	gltX	BA0086	J	glutamyl-tRNA synthetase	
84	 37.39       99213..99878    	 +	221	30260279	cysE	BA0088	E	serine O-acetyltransferase	
85	 36.77       99859..101256   	 +	465	30260280	cysS	BA0089	J	cysteinyl-tRNA synthetase	
86	 38.24      101259..101666   	 +	135	30260281	-	BA0090	S	conserved hypothetical protein	
87	 37.50      101663..102406   	 +	247	30260282	-	BA0091	J	RNA methyltransferase, TrmH family, group 3	
88	 37.62      102410..102922   	 +	170	30260283	-	BA0092	R	conserved hypothetical protein	
89	 35.92      102990..103646   	 +	218	30260284	sigH	BA0093	-	RNA polymerase sigma-30 factor	
90	 33.33      103778..103924   	 +	48	30260285	rpmG-1	BA0094	-	ribosomal protein L33	
91	 37.78      103957..104136   	 +	59	30260286	-	BA0095	U	preprotein translocase, SecE subunit	
92	 37.27      104268..104801   	 +	177	30260287	nusG	BA0096	K	transcription antitermination protein NusG	
93	 42.96 +2   104969..105394   	 +	141	30260288	rplK	BA0097	-	ribosomal protein L11	
94	 40.84 +1   105572..106264   	 +	230	30260289	rplA	BA0098	-	ribosomal protein L1	
95	 41.12 +1   106497..106997   	 +	166	30260290	rplJ	BA0099	-	ribosomal protein L10	
96	 39.17 +1   107065..107424   	 +	119	30260291	rplL	BA0100	-	ribosomal protein L7/L12	
97	 38.50      107499..108098   	 +	199	30260292	-	BA0101	J	ybxB protein	
98	 41.74 +1   108391..111924   	 +	1177	30260293	rpoB	BA0102	K	DNA-directed RNA polymerase, beta subunit	
99	 40.61 +1   111989..115573   	 +	1194	30260294	rpoC	BA0103	-	DNA-directed RNA polymerase, beta' subunit	
100	 36.55      115687..115935   	 +	82	30260295	-	BA0104	J	ribosomal protein L7A family	

 
 35.42 MEAN 
 
 3.63  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.