IslandPathversion 1.0

IslandPath Analysis: Bacillus anthracis A2012



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.61 STD DEV: 3.48
Bacillus anthracis A2012, unfinished sequence - 0..5093554
5544 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 36.71      273..953      	 +	226	21397376	-	BA_0001	S	MgtC, MgtC family	
2	 34.94        1049..2044     	 +	331	21397377	-	BA_0002	P	hypothetical protein predicted by GeneMark	
3	 36.23        2031..2444     	 -	137	21397378	-	BA_0003	-	hypothetical protein predicted by GeneMark	
4	 37.47        2552..3904     	 -	450	21397379	-	BA_0004	G	PGI, Phosphoglucose isomerase	
5	 42.31 +1     4179..4412     	 +	77	21397380	-	BA_0005	S	hypothetical protein predicted by GeneMark	
6	 36.23        4525..4869     	 -	114	21397381	-	BA_0006	J	S1, Ribosomal protein S1-like RNA-binding domain	
7	 38.71        5122..6312     	 -	396	21397382	-	BA_0007	E	aminotran_1_2, Aminotransferase class I and II	
8	 35.15        6309..6803     	 -	164	21397383	-	BA_0008	K	ASNC_trans_reg, AsnC family	
9	 38.67        6924..7916     	 +	330	21397384	-	BA_0009	C	2-Hacid_DH_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	
10	 36.55        8026..8865     	 +	279	21397385	-	BA_0010	R	abhydrolase, alpha/beta hydrolase fold	
11	 38.49        8895..9146     	 -	83	21397386	-	BA_0011	-	hypothetical protein predicted by GeneMark	
12	 37.67        9264..10415    	 +	383	21397387	-	BA_0012	E	aminotran_1_2, Aminotransferase class I and II	
13	 40.56 +1    10600..11139    	 -	179	21397388	-	BA_0013	P	sodcu, Copper/zinc superoxide dismutase (SODC)	
14	 36.16       11208..11384    	 -	58	21397389	-	BA_0014	-	hypothetical protein predicted by GeneMark	
15	 35.94       11550..11933    	 +	127	21397390	-	BA_0015	-	hypothetical protein predicted by GeneMark	
16	 37.50       11975..12598    	 -	207	21397391	-	BA_0016	L	EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other	
17	 37.33       12888..14213    	 +	441	21397392	-	BA_0017	P	ArsB, Arsenical pump membrane protein	
18	 35.04       14272..14739    	 -	155	21397393	-	BA_0018	-	hypothetical protein predicted by GeneMark	
19	 37.96       14858..15571    	 +	237	21397394	-	BA_0019	L	hypothetical protein predicted by GeneMark	
20	 40.45 +1    15919..17295    	 +	458	21397395	-	BA_0020	J	HGTP_anticodon, Anticodon binding domain	
21	 37.50       17333..17716    	 -	127	21397396	-	BA_0021	Q	DUF157, Uncharacterized protein PaaI, COG2050	
22	 31.72 -1    17812..18555    	 +	247	21397397	-	BA_0022	-	hypothetical protein predicted by GeneMark	
23	 39.56 +1    18606..19199    	 +	197	21397398	-	BA_0023	R	BioY, BioY family	
24	 30.70 -1    19347..20183    	 +	278	21397399	-	BA_0024	-	hypothetical protein predicted by GeneMark	
25	 37.27       20289..21176    	 -	295	21397400	-	BA_0025	M	NTP_transferase, Nucleotidyl transferase	
26	 38.61       21285..23009    	 -	574	21397401	-	BA_0026	G	PGM_PMM_I, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I	
27	 38.12       23153..23758    	 +	201	21397402	-	BA_0027	S	DUF147, Domain of unknown function DUF147	
28	 39.93 +1    23841..25325    	 -	494	21397403	-	BA_0028	E	Peptidase_M17, Cytosol aminopeptidase family, catalytic domain	
29	 38.12       25472..26098    	 -	208	21397404	-	BA_0029	S	hypothetical protein predicted by GeneMark	
30	 32.39       26185..26502    	 -	105	21397405	-	BA_0030	-	hypothetical protein predicted by GeneMark	
31	 40.63 +1    26499..27005    	 -	168	21397406	-	BA_0031	F	NUDIX, MutT-like domain	
32	 39.04       27129..28337    	 -	402	21397407	-	BA_0032	C	pyr_redox, Pyridine nucleotide-disulphide oxidoreductase	
33	 39.70 +1    28800..29789    	 +	329	21397408	-	BA_0033	O	pyr_redox, Pyridine nucleotide-disulphide oxidoreductase	
34	 36.46       29908..34194    	 -	1428	21397409	-	BA_0034	-	hypothetical protein predicted by GeneMark	
35	 36.11       34218..35873    	 -	551	21397410	-	BA_0035	-	hypothetical protein predicted by GeneMark	
36	 37.92       36317..36796    	 +	159	21397411	-	BA_0036	S	hypothetical protein predicted by GeneMark	
37	 37.82       36972..38219    	 +	415	21397412	-	BA_0037	G	hypothetical protein predicted by GeneMark	
38	 36.94       38230..39117    	 -	295	21397413	-	BA_0038	-	HTH_ASNC, helix_turn_helix ASNC type	
39	 38.96       39197..39658    	 +	153	21397414	-	BA_0039	S	hypothetical protein predicted by GeneMark	
40	 30.51 -1    39687..40040    	 -	117	21397415	-	BA_0040	S	hypothetical protein predicted by GeneMark	
41	 36.88       40452..41015    	 +	187	21397416	-	BA_0041	J	Acetyltransf, Acetyltransferase (GNAT) family	
42	 40.96 +1    41122..41475    	 -	117	21397417	-	BA_0042	S	HesB-like, HesB-like domain	
43	 40.02 +1    41517..42383    	 -	288	21397418	-	BA_0043	E	DAP_epimerase, Diaminopimelate epimerase	
44	 34.17       42627..42866    	 -	79	21397419	-	BA_0044	S	hypothetical protein predicted by GeneMark	
45	 39.68 +1    43218..44288    	 +	356	21397420	-	BA_0045	C	pyr_redox, Pyridine nucleotide-disulphide oxidoreductase	
46	 30.46 -1    44519..44692    	 +	57	21397421	-	BA_0046	-	hypothetical protein predicted by GeneMark	
47	 36.67       44747..45406    	 +	219	21397422	-	BA_0047	P	ABC_tran, ABC transporter	
48	 39.10 +1    45390..46187    	 +	265	21397423	-	BA_0048	R	hypothetical protein predicted by GeneMark	
49	 39.18 +1    46368..46709    	 -	113	21397424	-	BA_0049	P	TFIIE_alpha, TFIIE alpha subunit	
50	 34.21       46945..47739    	 -	264	21397425	-	BA_0050	-	hypothetical protein predicted by GeneMark	
51	 33.33       48041..49699    	 -	552	21397426	-	BA_0051	S	hypothetical protein predicted by GeneMark	
52	 35.46       49786..50256    	 +	156	21397427	-	BA_0052	-	hypothetical protein predicted by GeneMark	
53	 32.68       50281..50889    	 +	202	21397428	-	BA_0053	-	hypothetical protein predicted by GeneMark	
54	 37.52       50941..51609    	 -	222	21397429	-	BA_0054	-	hypothetical protein predicted by GeneMark	
55	 32.01 -1    51723..52400    	 -	225	21397430	-	BA_0055	R	Abi, CAAX amino terminal protease family	
56	 37.32       52499..53377    	 -	292	21397431	-	BA_0056	R	hypothetical protein predicted by GeneMark	
57	 37.54       53346..53654    	 -	102	21397432	-	BA_0057	S	hypothetical protein predicted by GeneMark	
58	 42.71 +2    53861..54148    	 +	95	21397433	-	BA_0058	O	NifU-like, NifU-like domain	
59	 30.56 -1    54532..54747    	 +	71	21397434	-	BA_0059	-	hypothetical protein predicted by GeneMark	
60	 37.33       54809..55810    	 -	333	21397435	-	BA_0060	-	hypothetical protein predicted by GeneMark	
61	 37.80       55931..56422    	 +	163	21397436	-	BA_0061	I	DUF64, Protein of unknown function DUF64	
62	 39.17 +1    56443..56922    	 -	159	21397437	-	BA_0062	R	hypothetical protein predicted by GeneMark	
63	 38.14       57533..58114    	 +	193	21397438	-	BA_0063	R	NADHdh_2, NAD(P)H dehydrogenase (quinone)	
64	 39.67 +1    58341..58892    	 -	183	21397439	-	BA_0064	G	Hydrolase, haloacid dehalogenase-like hydrolase	
65	 37.92       59196..59762    	 -	188	21397440	-	BA_0065	K	deoR, Bacterial regulatory proteins, deoR family	
66	 33.11       59834..60274    	 -	146	21397441	-	BA_0066	S	hypothetical protein predicted by GeneMark	
67	 41.58 +1    60422..60979    	 +	185	21397442	-	BA_0067	G	hypothetical protein predicted by GeneMark	
68	 38.53       61081..61407    	 +	108	21397443	-	BA_0068	G	hypothetical protein predicted by GeneMark	
69	 38.58       61425..61691    	 +	88	21397444	-	BA_0069	-	hypothetical protein predicted by GeneMark	
70	 34.93       62064..62501    	 +	145	21397445	-	BA_0070	S	hypothetical protein predicted by GeneMark	
71	 35.97       62607..62909    	 -	100	21397446	-	BA_0071	S	hypothetical protein predicted by GeneMark	
72	 35.94       63028..63603    	 +	191	21397447	-	BA_0072	-	hypothetical protein predicted by GeneMark	
73	 37.84       63641..64372    	 -	243	21397448	-	BA_0073	K	HTH_MERR, helix_turn_helix, mercury resistance	
74	 38.11       64500..65273    	 +	257	21397449	-	BA_0074	S	hypothetical protein predicted by GeneMark	
75	 34.02       65296..65730    	 -	144	21397450	-	BA_0075	-	hypothetical protein predicted by GeneMark	
76	 37.48       65872..66426    	 +	184	21397451	-	BA_0076	G	PGAM, Phosphoglycerate mutase family	
77	 37.50       66501..66980    	 +	159	21397452	-	BA_0077	S	hypothetical protein predicted by GeneMark	
78	 38.91       67001..67897    	 -	298	21397453	-	BA_0078	H	Lipoate_synth, Lipoate synthase	
79	 41.77 +1    68087..69070    	 +	327	21397454	-	BA_0079	M	Peptidase_M37, Peptidase family M23/M37	
80	 36.89       69107..69838    	 -	243	21397455	-	BA_0080	-	hypothetical protein predicted by GeneMark	
81	 38.94       69893..70195    	 -	100	21397456	-	BA_0081	S	hypothetical protein predicted by GeneMark	
82	 39.62 +1    70261..71517    	 -	418	21397457	-	BA_0082	F	5_nucleotidase, 5'-nucleotidase, catalytic domain	
83	 34.85       72376..72705    	 +	109	21397458	-	BA_0083	K	hypothetical protein predicted by GeneMark	
84	 33.73       72705..73451    	 +	248	21397459	-	BA_0084	V	hypothetical protein predicted by GeneMark	
85	 39.92 +1    73420..73662    	 -	80	21397460	-	BA_0085	-	hypothetical protein predicted by GeneMark	
86	 40.27 +1    73807..75204    	 -	465	21397461	-	BA_0086	O	UPF0051, Uncharacterized protein family (UPF0051)	
87	 37.04       75253..75684    	 -	143	21397462	-	BA_0087	C	NifU_N, NifU-like N terminal domain	
88	 38.41       75674..76894    	 -	406	21397463	-	BA_0088	E	aminotran_5, Aminotransferase class-V	
89	 41.84 +1    76894..78186    	 -	430	21397464	-	BA_0089	O	UPF0051, Uncharacterized protein family (UPF0051)	
90	 39.06       78202..78987    	 -	261	21397465	-	BA_0090	O	ABC_tran, ABC transporter	
91	 34.20       79226..80032    	 -	268	21397466	-	BA_0091	P	hypothetical protein predicted by GeneMark	
92	 33.83       80105..80917    	 -	270	21397467	-	BA_0092	P	hypothetical protein predicted by GeneMark	
93	 38.14       80941..81606    	 -	221	21397468	-	BA_0093	P	BPD_transp, Binding-protein-dependent transport systems inner membrane component	
94	 37.82       81599..82624    	 -	341	21397469	-	BA_0094	P	ABC_tran, ABC transporter	
95	 34.78       83156..83500    	 -	114	21397470	-	BA_0095	-	hypothetical protein predicted by GeneMark	
96	 34.67       83655..83954    	 -	99	21397471	-	BA_0096	O	thiored, Thioredoxin	
97	 37.10       83967..84311    	 -	114	21397472	-	BA_0097	L	Toprim, The Topoisomerase- primase domain- a nucleotidyl transferase/hydrolase domain	
98	 38.28       84808..85191    	 -	127	21397473	-	BA_0098	E	GCV_H, G cleavage H-protein	
99	 33.61       85233..85598    	 -	121	21397474	-	BA_0099	P	hypothetical protein predicted by GeneMark	
100	 37.17       86342..86680    	 -	112	21397475	-	BA_0100	-	hypothetical protein predicted by GeneMark	

 
 35.61 MEAN 
 
 3.48  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.