IslandPath Analysis: Acinetobacter sp. ADP1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.81   STD DEV: 4.14
Acinetobacter sp. ADP1, complete genome - 0..3598621
3325 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 43.85      201..1598     	 +	465	50083298	dnaA	ACIAD0001	-	DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes	
2	 44.13        1834..2982     	 +	382	50083299	dnaN	ACIAD0002	-	DNA polymerase III, beta chain	
3	 42.06        2998..4074     	 +	358	50083300	recF	ACIAD0003	-	DNA replication, recombinaison and repair protein	
4	 44.67        4127..6595     	 +	822	50083301	gyrB	ACIAD0004	-	DNA gyrase, subunit B (type II topoisomerase)	
5	 42.62        6712..6948     	 -	78	50083302	-	ACIAD0005	-	conserved hypothetical protein	
6	 34.50 -1     6969..7139     	 +	56	50083303	-	ACIAD0006	-	hypothetical protein	
7	 45.37 +1     7336..9270     	 -	644	50083304	-	ACIAD0007	-	putative transport protein (ABC superfamily, atp_bind)	
8	 43.03        9651..10661    	 +	336	50083305	-	ACIAD0008	-	putative RND type efflux pump involved in aminoglycoside resistance (AdeT)	
9	 43.03       10910..11920    	 +	336	50083306	adeT	ACIAD0009	-	RND type efflux pump involved in aminoglycoside resistance	
10	 41.96       12039..12374    	 +	111	50083307	-	ACIAD0010	-	conserved hypothetical protein	
11	 45.98 +1    12436..13566    	 -	376	50083308	-	ACIAD0011	-	conserved hypothetical protein	
12	 45.35 +1    13646..14860    	 +	404	50083309	tyrS	ACIAD0013	-	tyrosyl-tRNA synthetase	
13	 37.25       15431..15685    	 +	84	50083310	-	ACIAD0014	-	hypothetical protein	
14	 41.05       15927..17882    	 +	651	50083311	-	ACIAD0015	-	putative 5'-nucleotidase NucA precursor	
15	 38.86       23916..24530    	 +	204	50083312	-	ACIAD0017	-	putative glutathione S-transferase	
16	 41.99       24584..24895    	 +	103	50083313	-	ACIAD0018	-	conserved hypothetical protein	
17	 38.49       25116..25658    	 -	180	50083314	-	ACIAD0019	-	conserved hypothetical protein; putative flavoprotein	
18	 42.65       25757..26239    	 -	160	50083315	fkpB	ACIAD0020	-	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)	
19	 40.19       26232..26771    	 -	179	50083316	lspA	ACIAD0021	-	prolipoprotein signal peptidase (Signal peptidase II.)	
20	 44.82       26764..29601    	 -	945	50083317	ileS	ACIAD0022	-	isoleucyl-tRNA synthetase	
21	 44.01       29666..30667    	 -	333	50083318	ribF	ACIAD0023	-	bifunctional protein [Includes: riboflavin kinase (Flavokinase); FMN adenylyltransferase (FAD pyrophosphorylase) (FAD synthetase)]	
22	 43.20       30876..32000    	 +	374	50083319	-	ACIAD0024	-	putative malic acid transport protein	
23	 43.45       32045..32845    	 +	266	50083320	-	ACIAD0025	-	putative hydrolase (alpha/beta hydrolase superfamily)	
24	 41.26       32918..33535    	 -	205	50083321	-	ACIAD0026	-	putative transcriptional repressor (TetR/AcrR family)	
25	 44.50       33988..35097    	 +	369	50083322	-	ACIAD0027	-	putative enzyme (monooxygenase)	
26	 43.50       35094..35831    	 +	245	50083323	-	ACIAD0028	-	putative amidohydrolase (isochorismatase)	
27	 46.46 +1    35844..36224    	 +	126	50083324	-	ACIAD0029	-	conserved hypothetical protein	
28	 44.97 +1    36303..36869    	 +	188	50083325	-	ACIAD0030	-	putative flavin:NADH reductase (oxydoreductase)	
29	 46.45 +1    36899..38263    	 +	454	50083326	-	ACIAD0031	-	putative purine permease	
30	 47.08 +1    38279..39151    	 +	290	50083327	-	ACIAD0032	-	putative 3-hydroxyisobutyrate dehydrogenase	
31	 44.69       39182..39991    	 -	269	50083328	ssuB	ACIAD0034	-	alkanesulfonate transport protein (ABC superfamily, atp_bind)	
32	 46.44 +1    39995..40795    	 -	266	50083329	ssuC	ACIAD0035	-	alkanesulfonate transport protein (ABC superfamily, membrane)	
33	 48.11 +1    40792..41982    	 -	396	50083330	ssuD	ACIAD0036	-	FMNH(2)-dependent alkanesulfonate monooxygenase	
34	 44.35       42005..43012    	 -	335	50083331	ssuA	ACIAD0037	-	alkanesulfonate transport protein (ABC superfamily, peri_bind)	
35	 42.33       43039..44061    	 -	340	50083332	ssuA	ACIAD0038	-	alkanesulfonate transport protein (ABC superfamily, peri_bind)	
36	 43.95       44434..45789    	 -	451	50083333	argA	ACIAD0039	-	N-alpha-acetylglutamate synthase (amino-acid acetyltransferase)	
37	 43.56       45901..46203    	 -	100	50083334	-	ACIAD0040	-	conserved hypothetical protein; putative signal peptide	
38	 45.10 +1    46379..46786    	 -	135	50083335	-	ACIAD0041	-	conserved hypothetical protein; putative signal peptide	
39	 46.99 +1    47056..47802    	 -	248	50083336	-	ACIAD0042	-	putative oxoacyl-(acyl carrier protein) reductase	
40	 46.61 +1    47833..48540    	 -	235	50083337	-	ACIAD0043	-	putative phosphoglycolate phosphatase 2 (PGP 2)	
41	 45.05 +1    48537..49253    	 -	238	50083338	ubiG	ACIAD0044	-	3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase	
42	 41.22       49432..50052    	 +	206	50083339	dsbA	ACIAD0045	-	thiol:disulfide interchange protein, periplasmic, alkali-inducible	
43	 42.67       50137..50811    	 -	224	50083340	-	ACIAD0046	-	putative transcriptional regulator	
44	 46.23 +1    50905..51540    	 -	211	50083341	-	ACIAD0047	-	conserved hypothetical protein; putative transcriptional regulator (TetR family)	
45	 42.42       51732..52754    	 +	340	50083342	-	ACIAD0048	-	putative oxidoreductase	
46	 42.19       52789..53940    	 +	383	50083343	-	ACIAD0049	-	conserved hypothetical protein; putative linoleoyl-CoA desaturase	
47	 44.71       54008..54763    	 +	251	50083344	rph	ACIAD0050	-	ribonuclease PH (RNase PH), tRNA nucleotidyltransferase	
48	 38.60       54987..55442    	 +	151	50083345	-	ACIAD0051	-	hypothetical protein	
49	 35.52 -1    55435..55983    	 +	182	50083346	-	ACIAD0052	-	hypothetical protein; putative bacteriophage	
50	 27.01 -2    55985..56617    	 +	210	50083347	-	ACIAD0053	-	hypothetical protein; putative zinc protease	
51	 22.74 -2    56618..57070    	 +	150	50083348	-	ACIAD0054	-	hypothetical protein; putative fragment of ribosomal protein S3	
52	 20.93 -2    57346..57474    	 +	42	50083349	-	ACIAD0055	-	hypothetical protein	
53	 25.79 -2    57531..57689    	 +	52	50083350	-	ACIAD0056	-	hypothetical protein	
54	 31.54 -2    57779..58168    	 +	129	50083351	-	ACIAD0057	-	hypothetical protein; putative fragment of transposase	
55	 39.25       58242..58427    	 +	61	50083352	-	ACIAD0058	-	hypothetical protein; putative fragment of transposase	
56	 31.40 -2    58409..58615    	 +	68	50083353	-	ACIAD0059	-	hypothetical protein; putative fragment of transposase	
57	 38.10       58923..59048    	 +	41	50083354	-	ACIAD0060	-	hypothetical protein	
58	 42.16       59058..59261    	 +	67	50083355	-	ACIAD0061	-	hypothetical protein; putative signal peptide	
59	 44.60       59258..60127    	 -	289	50083356	nadC	ACIAD0062	-	nicotinate-nucleotide pyrophosphorylase (quinolinate phosphoribosyltransferase)	
60	 43.99       60290..60880    	 +	196	50083357	ampD	ACIAD0063	-	N-acetyl-anhydromuramyl-L-alanine amidase (Regulates ampC)	
61	 46.06 +1    60933..62480    	 +	515	50083358	-	ACIAD0064	-	putative virulence factor MviN family (multidrug/oligosaccharidyl-lipid/polysaccharide exporter superfamily)	
62	 44.21       62660..63358    	 -	232	50083359	fklB	ACIAD0065	-	FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)	
63	 43.50       63404..64111    	 -	235	50083360	fkpA	ACIAD0066	-	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)	
64	 39.53       64281..66491    	 -	736	50083361	ptk	ACIAD0068	-	tyrosine-protein kinase, autophosphorylates	
65	 42.13       66506..66937    	 -	143	50083362	ptp	ACIAD0069	-	low molecular weight protein-tyrosine-phosphatase	
66	 43.03       66934..68037    	 -	367	50083363	wza	ACIAD0070	-	polysaccharide export protein	
67	 37.97       68507..69670    	 +	387	50083364	ugd	ACIAD0072	-	UDP-glucose 6-dehydrogenase	
68	 28.47 -2    69689..70573    	 +	294	50083365	-	ACIAD0073	-	putative glycosyl transferase family 2	
69	 26.77 -2    70563..71492    	 +	309	50083366	-	ACIAD0074	-	putative glycosyl transferase family 2	
70	 25.02 -2    71489..72739    	 +	416	50083367	-	ACIAD0075	-	putative polysaccharide transport protein	
71	 40.15       72769..73839    	 +	356	50083368	rmlB	ACIAD0076	-	dTDP-D-glucose-4,6-dehydratase	
72	 40.15       73858..74766    	 +	302	50083369	rmlD	ACIAD0078	-	dTDP-4-dehydrorhamnose reductase (dTDP-4-keto-L-rhamnose reductase) (dTDP-6-deoxy-L-mannose dehydrogenase) (dTDP-L-rhamnose synthetase)	
73	 40.33       74767..75666    	 +	299	50083370	rmlA	ACIAD0079	-	dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase)	
74	 37.94       75737..76300    	 +	187	50083371	rmlC	ACIAD0080	-	dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase	
75	 29.91 -2    76314..77393    	 +	359	50083372	-	ACIAD0081	-	putative glycosyl transferase family 1	
76	 26.69 -2    77383..78330    	 +	315	50083373	-	ACIAD0082	-	putative glycosyl transferase family 2 (rhamnosyl transferase)	
77	 22.77 -2    78350..79315    	 +	321	50083374	-	ACIAD0083	-	conserved hypothetical protein; putative polysaccharide polymerase	
78	 29.02 -2    79335..80354    	 +	339	50083375	-	ACIAD0084	-	putative glycosyl transferase family 1 (mannosyl transferase)	
79	 33.96 -1    80367..81164    	 +	265	50083376	-	ACIAD0085	-	putative glycosyl transferase family 2	
80	 42.14       81192..82610    	 -	472	50083377	epsM	ACIAD0086	-	bifunctional protein [Includes: Mannose-6-phosphate isomerase (Phosphomannose isomerase) (Pmi) (Phosphohexomutase); Mannose-1-phosphate guanylyl transferase (Gdp) (GDP-mannose pyrophosphorylase) (Gmp)]	
81	 44.93       82926..84218    	 +	430	50083378	-	ACIAD0087	-	putative UDP-glucose/GDP-mannose dehydrogenase	
82	 47.09 +1    84248..85279    	 +	343	50083379	-	ACIAD0088	-	putative NAD-dependent epimerase/dehydratase (WbpP)	
83	 43.21       85279..86574    	 +	431	50083380	-	ACIAD0089	-	putative virulence factor MviN family (multidrug/oligosaccharidyl-lipid/polysaccharide exporter superfamily)	
84	 47.96 +1    86571..87671    	 +	366	50083381	-	ACIAD0090	-	putative glycosyl transferase family 1	
85	 45.97 +1    87684..88775    	 +	363	50083382	-	ACIAD0091	-	putative glycosyl transferase family 1	
86	 49.52 +2    88784..89920    	 +	378	50083383	-	ACIAD0092	-	putative glycosyl transferase family 1	
87	 46.34 +1    89914..90528    	 +	204	50083384	-	ACIAD0093	-	putative UDP-galactose phosphate transferase (WeeH)	
88	 46.43 +1    90509..91195    	 +	228	50083385	-	ACIAD0094	-	putative acetyltransferase (WeeI)	
89	 48.30 +1    91199..92374    	 +	391	50083386	per	ACIAD0095	-	perosamine synthetase (WeeJ)	
90	 45.24 +1    92376..94265    	 +	629	50083387	-	ACIAD0096	-	putative dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase (WeeK) (WbpM)	
91	 36.63 -1    94679..96043    	 +	454	50083388	-	ACIAD0098	-	putative UDP-glucose lipid carrier transferase/glucose-1-phosphate transferase in colanic acid gene cluster (WcaJ)	
92	 42.68       96123..97010    	 +	295	50083389	galU	ACIAD0099	-	UTP-glucose-1-phosphate uridylyltransferase	
93	 41.51       97037..98308    	 +	423	50083390	-	ACIAD0100	-	putative UDP-glucose 6-dehydrogenase (Ugd) (Udg)	
94	 41.40       98305..99978    	 +	557	50083391	pgi	ACIAD0101	-	glucose-6-phosphate isomerase	
95	 44.12       99971..100990   	 +	339	50083392	galE	ACIAD0102	-	UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase)	
96	 44.11      101027..102733   	 +	568	50083393	-	ACIAD0103	-	conserved hypothetical protein; putative membrane protein	
97	 42.94      102792..104165   	 -	457	50083394	manB	ACIAD0104	-	bifunctional protein [Includes: phosphomannomutase (Pmm); putative phosphoglucomutase (Glucose phosphomutase) (Pgm)]	
98	 41.00      104308..105207   	 -	299	50083395	-	ACIAD0105	-	putative transcriptional regulator DNA-binding,transcriptional regulator (LysR family)	
99	 43.66      105761..107416   	 +	551	50083396	lldP	ACIAD0106	-	L-lactate permease	
100	 49.40 +2   107440..108192   	 +	250	50083397	lldR	ACIAD0107	-	transcriptional repressor for L-lactate utilization (GntR family)	

 
 40.81 MEAN 
 
 4.14  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.